|
| Status |
Public on Jan 24, 2020 |
| Title |
Primate-restricted KRAB zinc finger proteins control gene expression in human brain |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
32923624 |
| |
| Submission date |
Jan 24, 2020 |
| Last update date |
Sep 21, 2020 |
| Contact name |
Delphine Grun |
| E-mail(s) |
delphine.grun@epfl.ch
|
| Organization name |
EPFL
|
| Street address |
route Cantonale
|
| City |
Lausanne |
| ZIP/Postal code |
1015 |
| Country |
Switzerland |
| |
|
| Platforms (4)
|
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL24268 |
Illumina Nextseq 500 (Homo sapiens) |
|
| Samples (71)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE144148 |
Histones ChIP-seq in control and ZNFKD H1 cells |
| GSE144149 |
ZNF417 and ZNF587 ChIP-seq in H1 cells |
| GSE144150 |
KAP1 ChIP-seq in hESC |
| GSE144151 |
RNA-seq of HERVK-CRIPRi IPS and iN cells |
| GSE144152 |
RNAseq of hIPS cells at day 0 and hiPS-differentiated induced neuron at day 4 post neuronal induction |
| GSE144153 |
RNA-seq of ZNF417/ZNF587 KD or control H1 cells |
| GSE145405 |
RNA-seq of untreated- or STING inhibitor treated control and ZNFKD iN. |
| GSE145406 |
Control or KZFP KD hESC-derived organoids RNA-seqs |
|
| Relations |
| BioProject |
PRJNA602996 |
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