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Series GSE144032 Query DataSets for GSE144032
Status Public on Nov 20, 2020
Title m6A profiling of early, adolescent, aged and Alzheimer brains
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary m6A-seq was performed on 4 brain regions (cortex, cerebellum, hypothalmus and hippocampus) of 2 week, 4 week, 6 week, 26 week and 52 week old BL6 mice. m6A profiling was also performed on human adolescent and old brain tissue (region BA9). m6A-seq was also performed on WT and 5xFAD mice (Alzheimer).
 
Overall design RNA was extracted from the brain tissues in biologcial duplicates. m6A-seq was completed on these samples using a m6A-antibody coupled with NGS. RNA-seq of the same samples are also included to serve as a background for m6A peak calling.
 
Contributor(s) Shafik A, Jin P
Citation(s) 33402207
Submission date Jan 21, 2020
Last update date Jan 11, 2021
Contact name Andrew Shafik
E-mail(s) ashafik@emory.edu
Organization name Emory University
Department Human Genetics
Lab Peng Jin
Street address 615 Michael Street
City Atlanta
ZIP/Postal code 30322
Country USA
 
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (58)
GSM4278309 RNAseq_6wk_cortex_m6AIP_rep1
GSM4278310 RNAseq_6wk_cortex_input_rep1
GSM4278311 RNAseq_6wk_cortex_m6AIP_rep2
Relations
BioProject PRJNA602538
SRA SRP243780

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144032_m6A_1yr_cerebellum_called_peaks.txt.gz 239.8 Kb (ftp)(http) TXT
GSE144032_m6A_1yr_cortex_called_peaks.txt.gz 296.7 Kb (ftp)(http) TXT
GSE144032_m6A_26wk_cortex_called_peaks.xlsx 916.3 Kb (ftp)(http) XLSX
GSE144032_m6A_2wk_cerebellum_called_peaks.txt.gz 270.6 Kb (ftp)(http) TXT
GSE144032_m6A_2wk_cortex_called_peaks.txt.gz 293.2 Kb (ftp)(http) TXT
GSE144032_m6A_2wk_hippocampus_called_peaks.txt.gz 293.2 Kb (ftp)(http) TXT
GSE144032_m6A_2wk_hypothalamus_called_peaks.txt.gz 289.2 Kb (ftp)(http) TXT
GSE144032_m6A_4wk_cortex_called_peaks.xlsx 1019.9 Kb (ftp)(http) XLSX
GSE144032_m6A_6wk_cerebellum_called_peaks.xls.gz 388.6 Kb (ftp)(http) XLS
GSE144032_m6A_6wk_cortex_called_peaks.xls.gz 491.7 Kb (ftp)(http) XLS
GSE144032_m6A_6wk_hippocampus_called_peaks.xls.gz 324.4 Kb (ftp)(http) XLS
GSE144032_m6A_6wk_hypothalamus_called_peaks.xls.gz 318.1 Kb (ftp)(http) XLS
GSE144032_m6A_FAD_called_peaks.xlsx 1.2 Mb (ftp)(http) XLSX
GSE144032_m6A_WT_called_peaks.xlsx 1.3 Mb (ftp)(http) XLSX
GSE144032_m6A_old_called_peaks.xlsx 3.4 Mb (ftp)(http) XLSX
GSE144032_m6A_young_called_peaks.xlsx 2.5 Mb (ftp)(http) XLSX
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Processed data are available on Series record

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