|
| Status |
Public on Apr 20, 2020 |
| Title |
WT vs TNFAIP8 knockout enterocyte single cell RNA-Seq |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We compare wild type and TNFAIP8 ileal enterocytes by single cell RNA-Seq and find loss of TNFAIP8 results in increased numbers of Lgr5+ stem cells, goblet cells, and partially differentiated cells by gene signature analysis
|
| |
|
| Overall design |
Examination of cell populations in WT vs TNFAIP8-/- ileums by single cell RNA-seq
|
| |
|
| Contributor(s) |
Goldsmith J, Gonzalez MV |
| Citation(s) |
32444641 |
| |
| Submission date |
Jan 18, 2020 |
| Last update date |
Jun 08, 2020 |
| Contact name |
Michael Gonzalez |
| E-mail(s) |
michael.gonzalez1@pennmedicine.upenn.edu
|
| Phone |
9098389935
|
| Organization name |
University of Pennsylvania
|
| Department |
Translational Medicine and Human Genetics
|
| Lab |
Fajgenbaum
|
| Street address |
3535 Market St
|
| City |
Philadelphia |
| State/province |
Pennsylvania |
| ZIP/Postal code |
19122 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (2) |
|
| Relations |
| BioProject |
PRJNA602093 |
| SRA |
SRP242703 |
