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| Status |
Public on May 03, 2009 |
| Title |
Characterization of expression changes in armi,rhino,aub,ago3 mutants by tiling array |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by genome tiling array
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| Summary |
We characterized changes of transposon and mRNA expressions in armi, rhino ,aub, ago3 mutants with respect to wild type using Affy tiling array. In most of these mutants, mRNA expressions were mostly unchanged but increased expressions was observed for many transposons indicating the role of these proteins in silencing transposons in Drosophila ovaries
Keywords: Tiling array transcriptome profiling
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| Overall design |
3 replicates of each mutants and wild type, total RNA samples hybridized to tiling array.
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| Contributor(s) |
Klattenhoff C, Schultz N, Koppetsch B, Xi H, Theurkauf W |
| Citation(s) |
19395009, 19732946 |
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| Submission date |
Jan 12, 2009 |
| Last update date |
Sep 25, 2019 |
| Contact name |
Hualin Xi |
| E-mail(s) |
xih@bu.edu
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| Organization name |
Boston University
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| Street address |
44 Cummington Street
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
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| Platforms (1) |
| GPL6629 |
[DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array |
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| Samples (15)
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| GSM359336 |
P[W+]armi1/armi72.1 RNA (replicated 1) |
| GSM359337 |
P[W+]armi1/armi72.1 RNA (replicated 2) |
| GSM359338 |
P[W+]armi1/armi72.1 RNA (replicated 3) |
| GSM359339 |
P[ry +t7.2=PZ]rhi02096 cn/P{SUP or-P}KG00910 (replicated 1) |
| GSM359340 |
P[ry +t7.2=PZ]rhi02096 cn/P{SUP or-P}KG00910 (replicated 2) |
| GSM359341 |
P[ry +t7.2=PZ]rhi02096 cn/P{SUP or-P}KG00910 (replicated 3) |
| GSM359342 |
aubHN2 cn bw/ aubQC42 cn bw (replicated 1) |
| GSM359343 |
aubHN2 cn bw/ aubQC42 cn bw (replicated 2) |
| GSM359344 |
aubHN2 cn bw/ aubQC42 cn bw (replicated 3) |
| GSM359345 |
ago3t2/ago3t3 (replicated 1) |
| GSM359346 |
ago3t2/ago3t3 (replicated 2) |
| GSM359347 |
ago3t2/ago3t3 (replicated 3) |
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| Relations |
| BioProject |
PRJNA111411 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE14370_RAW.tar |
363.4 Mb |
(http)(custom) |
TAR (of CEL, TXT) |
| Processed data provided as supplementary file |
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