 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 30, 2020 |
| Title |
RNA-seq analysis of liver cancer patients' plasma |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Liver cancer is one of the most lethal cancers worldwide. Liquid biopsy provides a noninvasive approach in detecting and monitoring cancer biomarkers to overcome current limitations associated with tissue biopsies, comprising the analysis of circulating tumor-derived material. In this study, we profiled plasma cell-free RNA-seq to identify recurrently dysregulated RNA biomarkers for the liquid biopsy of cancer.
|
| |
|
| Overall design |
RNA-seq of plasma collected from liver cancer patients and healthy donors
|
| |
|
| Contributor(s) |
Zhu Y |
| Citation(s) |
33391469 |
| |
| Submission date |
Jan 03, 2020 |
| Last update date |
Jan 19, 2021 |
| Contact name |
Yumin Zhu |
| E-mail(s) |
zhuym15@mails.tsinghua.edu.cn
|
| Phone |
18813003208
|
| Organization name |
Tsinghua University
|
| Department |
Life Science
|
| Street address |
Tsinghua University
|
| City |
Beijing |
| State/province |
NA |
| ZIP/Postal code |
100084 |
| Country |
China |
| |
|
| Platforms (1) |
|
| Samples (65)
|
| GSM4247476 |
Plasma, liver_cancer_4 |
| GSM4247477 |
Plasma, liver_cancer_5 |
| GSM4247478 |
Plasma, liver_cancer_6 |
| GSM4247479 |
Plasma, liver_cancer_7 |
| GSM4247480 |
Plasma, liver_cancer_8 |
| GSM4247481 |
Plasma, liver_cancer_9 |
| GSM4247482 |
Plasma, liver_cancer_10 |
| GSM4247483 |
Plasma, liver_cancer_11 |
| GSM4247484 |
Plasma, liver_cancer_12 |
| GSM4247485 |
Plasma, liver_cancer_13 |
| GSM4247486 |
Plasma, liver_cancer_14 |
| GSM4247487 |
Plasma, liver_cancer_15 |
| GSM4247488 |
Plasma, liver_cancer_16 |
| GSM4247489 |
Plasma, liver_cancer_17 |
| GSM4247490 |
Plasma, liver_cancer_18 |
| GSM4247491 |
Plasma, liver_cancer_19 |
| GSM4247492 |
Plasma, liver_cancer_20 |
| GSM4247493 |
Plasma, liver_cancer_21 |
| GSM4247494 |
Plasma, liver_cancer_22 |
| GSM4247495 |
Plasma, liver_cancer_23 |
| GSM4247496 |
Plasma, liver_cancer_24 |
| GSM4247497 |
Plasma, liver_cancer_25 |
| GSM4247498 |
Plasma, liver_cancer_26 |
| GSM4247499 |
Plasma, liver_cancer_27 |
| GSM4247500 |
Plasma, liver_cancer_28 |
| GSM4247501 |
Plasma, liver_cancer_29 |
| GSM4247502 |
Plasma, liver_cancer_30 |
| GSM4247503 |
Plasma, liver_cancer_31 |
| GSM4247504 |
Plasma, liver_cancer_32 |
| GSM4247505 |
Plasma, liver_cancer_33 |
| GSM4247506 |
Plasma, liver_cancer_34 |
| GSM4247507 |
Plasma, liver_cancer_35 |
| GSM4247508 |
Plasma, healthy_1 |
| GSM4247509 |
Plasma, healthy_2 |
| GSM4247510 |
Plasma, healthy_3 |
| GSM4247511 |
Plasma, healthy_4 |
| GSM4247512 |
Plasma, healthy_5 |
| GSM4247513 |
Plasma, healthy_6 |
| GSM4247514 |
Plasma, healthy_7 |
| GSM4247515 |
Plasma, healthy_8 |
| GSM4247516 |
Plasma, healthy_9 |
| GSM4247517 |
Plasma, healthy_10 |
| GSM4247518 |
Plasma, healthy_11 |
| GSM4247519 |
Plasma, healthy_12 |
| GSM4247520 |
Plasma, healthy_13 |
| GSM4247521 |
Plasma, healthy_14 |
| GSM4247522 |
Plasma, healthy_15 |
| GSM4247523 |
Plasma, healthy_16 |
| GSM4247524 |
Plasma, healthy_17 |
| GSM4247525 |
Plasma, healthy_18 |
| GSM4247526 |
Plasma, healthy_19 |
| GSM4247527 |
Plasma, healthy_20 |
| GSM4247528 |
Plasma, healthy_21 |
| GSM4247529 |
Plasma, healthy_22 |
| GSM4247530 |
Plasma, healthy_23 |
| GSM4247531 |
Plasma, healthy_24 |
| GSM4247532 |
Plasma, healthy_25 |
| GSM4247533 |
Plasma, healthy_26 |
| GSM4247534 |
Plasma, healthy_27 |
| GSM4247535 |
Plasma, healthy_28 |
| GSM4247536 |
Plasma, healthy_29 |
| GSM4247537 |
Plasma, healthy_30 |
|
| Relations |
| BioProject |
PRJNA598835 |
| SRA |
SRP239389 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE142987_sample_count_matrix.txt.gz |
2.7 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...