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Series GSE141635 Query DataSets for GSE141635
Status Public on Jun 02, 2020
Title Histone modifications in lung epithelial cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report histone modifications in alveolar epithelial type 2 cells in homeostatic mice as well as CTGF-positive alveolar eptihelial cells in mice treated with Bleomycin.
 
Overall design We performed Mint-ChIP (ChIP-seq for low cell number samples) using antibodies for H3K4me3, H3K27ac, H3K36me3, H3 and p53)
 
Contributor(s) Kobayashi Y, Tata A, Tata PR
Citation(s) 32661339
Submission date Dec 09, 2019
Last update date Aug 07, 2020
Contact name Yoshihiko Kobayashi
E-mail(s) tata.lab@yahoo.com
Organization name Duke University
Department Cell Biology
Lab Tata Lab
Street address 307 Research Dr
City Durham
State/province NC
ZIP/Postal code 27710
Country USA
 
Platforms (2)
GPL21273 HiSeq X Ten (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (20)
GSM4210296 H3K4me3 ChIP-seq CTGF-pos epithelial cells after Bleomycin treatment Replication 1
GSM4210297 H3K4me3 ChIP-seq CTGF-pos epithelial cells after Bleomycin treatment Replication 2
GSM4210298 H3K27ac ChIP-seq CTGF-pos epithelial cells after Bleomycin treatment Replication 1
Relations
BioProject PRJNA594274
SRA SRP235223

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE141635_AEC2_Homeostasis_H3K27ac.bedgraph.gz 151.6 Mb (ftp)(http) BEDGRAPH
GSE141635_AEC2_Homeostasis_H3K36me3.bedgraph.gz 163.9 Mb (ftp)(http) BEDGRAPH
GSE141635_AEC2_Homeostasis_H3K4me3.bedgraph.gz 171.7 Mb (ftp)(http) BEDGRAPH
GSE141635_AEC2_Homeostasis_H3K4me3_calledpeaks.bed.gz 386.1 Kb (ftp)(http) BED
GSE141635_CTGFpos_Bleomycin_H3K27ac.bedgraph.gz 119.5 Mb (ftp)(http) BEDGRAPH
GSE141635_CTGFpos_Bleomycin_H3K36me3.bedgraph.gz 354.0 Mb (ftp)(http) BEDGRAPH
GSE141635_CTGFpos_Bleomycin_H3K4me3.bedgraph.gz 301.1 Mb (ftp)(http) BEDGRAPH
GSE141635_CTGFpos_Bleomycin_H3K4me3_calledpeaks.bed.gz 304.4 Kb (ftp)(http) BED
GSE141635_CTGFpos_tdTomatopos_Bleomycin_Input.bedgraph.gz 36.9 Mb (ftp)(http) BEDGRAPH
GSE141635_CTGFpos_tdTomatopos_Bleomycin_p53.bedgraph.gz 35.3 Mb (ftp)(http) BEDGRAPH
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Processed data are available on Series record
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