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Series GSE141319 Query DataSets for GSE141319
Status Public on Oct 03, 2021
Title Progressive ER stress over time due to human insulin gene mutation contributes to pancreatic β-cell dysfunction, islet inflammation and compensatory responses
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Heterozygous human INS gene mutations are known to promote ER stress, leading to β-cell dysfunction and neonatal diabetes. Recent literature challenged the long-standing notion that neonatal diabetes occurs due to ER stress-induced β-cell apoptosis. Importantly, mechanisms of β-cell failure during the disease progression and why the other wild-type (WT) INS allele is unable to function still remain unclear. Here, our computational modelling studies, short-term and long-term expression studies in β-cells revealed the presence of ER stress, organelle changes and insulin processing defects, resulting in decreased insulin secretion but not insulin secretory capacity. By nine weeks of expression of mutant INS, dominant negative effects of mutant INS were evident and β-cell insulin secretory capacity declined. INS+/C109Y patient-derived β-like cells and single cell RNA-Sequencing analyses then revealed compensatory upregulation in genes involved in insulin secretion, processing and inflammatory response. Our results provide deeper insights into the mechanisms of β-cell failure during INS mutation-mediated diabetes disease progression. Decreasing CHOP-10, sXBP1 or inflammatory response could be avenues to restore the function of the remaining WT INS allele.
 
Overall design To identify genome-wide transcriptomic perturbations caused by INS+/C109Y mutation, we performed single-cell RNA-Seq analyses on the hiPSC-derived β-like cells
 
Contributor(s) Amirruddin NS, Tan YS, Gardner D, Yong MB, Verma CS, Hoon S, Lee KO, Teo AK
Citation(s) 34448879
Submission date Dec 02, 2019
Last update date Jan 02, 2022
Contact name Adrian Kee Keong Teo
E-mail(s) ateo@imcb.a-star.edu.sg
Organization name IMCB, A*STAR
Department Stem Cells and Diabetes Laboratory
Street address 61 Biopolis Drive, Proteos
City Singapore
State/province Singapore
ZIP/Postal code 138673
Country Singapore
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (2)
GSM4200743 S_10X010Wt
GSM4200744 S_10X01_1_het
Relations
BioProject PRJNA593046
SRA SRP234455

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE141319_WT_HET_normalized.h5 32.7 Mb (ftp)(http) H5
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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