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Series GSE141277 Query DataSets for GSE141277
Status Public on Sep 28, 2022
Title Transcription regulation of SNCA by dystonia type 6 gene product THAP1 [4C-Seq]
Organism Homo sapiens
Experiment type Other
Summary The predominantly function of THAP1 has been defined as a transcription factor, but how it regulates gene expression in human neurons is not well understood. Here, we found that THAP1 is able to regulate the expression of alpha-synuclein (SNCA), a key protein in Parkinson’s disease (PD).
 
Overall design 4C-seq analysis of SNCA promoter interact regions
 
Contributor(s) Cheng F, Riess O
Citation(s) 35015830
BioProject PRJNA591445
Submission date Dec 02, 2019
Last update date Sep 29, 2022
Contact name Fubo Cheng
E-mail(s) fubo.cheng@med.uni-tuebingen.de
Organization name University of Tuebingen
Department Institute of Medical Genetics and Applied Genomics
Street address Calwerstrasse 7
City Tuebingen
ZIP/Postal code 72076
Country Germany
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM4200330 4C-seq wild-type repeat 1
GSM4200331 4C-seq wild-type repeat 2
GSM4200332 4C-seq CTCF KO repeat 1
This SubSeries is part of SuperSeries:
GSE141278 Transcription regulation of SNCA by dystonia type 6 gene product THAP1
Relations
SRA SRP232957

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE141277_RAW.tar 90.0 Kb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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