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Series GSE141103 Query DataSets for GSE141103
Status Public on Nov 28, 2019
Title Amplification of Oocytes through Parthenogenesis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We asked whether oocyte number could be amplified through parthenogenesis of mouse oocytes, without requiring creation of a paternal genome and a genetically unique genome. Parthenotes develop to a blastocyst-like stage, and from this parthenogenetic ESCs (pESCs) can be derived with high efficiency. Like ESCs, pESCs maintain unlimited self-renewal and pluripotency, as well as germline competence. Further, we demonstrate that their expression pattern of imprinted maternal genes resembles that observed in oocytes. pESCs can be directed to differentiate into primordial germ cell-like cells (PGCLCs) and form oocytes that produce fertile pups and reconstitute ovarian endocrine functions. The transcriptome and imprinting pattern of PGCLCs differentiated from pESCs more closely approximate those of in vivo produced embryonic PGCs, than PGCLCs produced from ESCs. Parthenogenesis offers a promising route for deriving PGCLCs and amplifying oocytes by faithfully maintaining maternal genes, without fertilization.
 
Overall design We used ESC and pESC to do RNA-seq for analysis the gene expression of pluripotent genes, X-linked genes and imprinting genes; and then used pESC-PGCLC, ESC-PGCLC and PGCs to do RNA-seq for analysis the germ cell marker genes and imprinting genes expression.
 
Contributor(s) Tian C
Citation(s) 34845589
Submission date Nov 27, 2019
Last update date Dec 22, 2021
Contact name Chenglei Tian
E-mail(s) chenglei.tian@helmholtz-munich.de
Organization name Helmholtz Munich
Lab Instirution of translational stem cell research
Street address Ingolstädter Landstraße 1
City Munich
ZIP/Postal code 85764
Country Germany
 
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (10)
GSM4195013 Female ESC_Replicate1
GSM4195014 Female ESC_Replicate2
GSM4195015 pESC_Replicate1
Relations
BioProject PRJNA592123
SRA SRP233486

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE141103_expMatrix_Tpm_pESC.csv.gz 1.5 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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