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Series GSE140704 Query DataSets for GSE140704
Status Public on Feb 05, 2020
Title Imp/IGF2BP levels modulate individual neural stem cell growth and division through myc mRNA stability
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary The numerous neurons and glia that form the brain originate from tightly controlled growth and division of neural stem cells, regulated systemically by known extrinsic signals. However, the intrinsic mechanisms that control the characteristic proliferation rates of individual neural stem cells are unknown. Here, we show that the size and division rates of Drosophila neural stem cells (neuroblasts) are controlled by the highly conserved RNA binding protein Imp (IGF2BP), via one of its top binding targets in the brain, myc mRNA. We show that Imp stabilises myc mRNA leading to increased Myc protein levels, larger neuroblasts, and faster division rates. Declining Imp levels throughout development limit myc mRNA stability to restrain neuroblast growth and division, while heterogeneous Imp expression correlates with myc mRNA stability between individual neuroblasts in the brain. We propose that Imp-dependent regulation of myc mRNA stability fine-tunes individual neural stem cell proliferation rates.
 
Overall design RNA-seq and RIP-seq in Drosophila L3 larval brain.
 
Contributor(s) Samuels T, Järvelin AI, Davis I
Citation(s) 31934860
Submission date Nov 19, 2019
Last update date Feb 07, 2020
Contact name Aino Inkeri Järvelin
Organization name University of Oxford
Department Department of Biochemistry
Street address South Parks Road
City Oxford
ZIP/Postal code OX1 3QU
Country United Kingdom
 
Platforms (1)
GPL19528 Ion Torrent Proton (Drosophila melanogaster)
Samples (6)
GSM4182284 Imp::GFP RNAseq 1
GSM4182285 Imp::GFP RNAseq 2
GSM4182286 Imp::GFP RNAseq 3
Relations
BioProject PRJNA591594
SRA SRP233205

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE140704_RAW.tar 342.1 Mb (http)(custom) TAR (of BEDGRAPH)
GSE140704_counts.ranked.with.DESeq.with.overlaps.tsv.gz 3.3 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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