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Series GSE13948 Query DataSets for GSE13948
Status Public on Dec 16, 2008
Title Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR
Organism Mus musculus
Experiment type Expression profiling by array
Summary Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to up-regulation of a large set of predicted target mRNAs in the liver

MicroRNA-122 (miR-122) is an abundant liver-specific miRNA, implicated in fatty acid and cholesterol metabolism as well as hepatitis C viral replication. Here, we report that a systemically administered 16-nt, unconjugated LNA (locked nucleic acid)-antimiR oligonucleotide complementary to the 5' end of miR-122 leads to specific, dose-dependent silencing of miR-122 and shows no hepatotoxicity in mice. Antagonism of miR-122 is due to formation of stable heteroduplexes between the LNA-antimiR and miR-122 as detected by northern analysis. Fluorescence in situ hybridization demonstrated uptake of the LNA-antimiR in mouse liver cells, which was accompanied by markedly reduced hybridization signals for mature miR-122 in treated mice. Functional antagonism of miR-122 was inferred from a low cholesterol phenotype and de-repression within 24 h of 199 liver mRNAs showing significant enrichment for miR-122 seed matches in their 3' UTRs. Expression profiling extended to 3 weeks after the last LNA-antimiR dose revealed that most of the changes in liver gene expression were normalized to saline control levels coinciding with normalized miR-122 and plasma cholesterol levels. Combined, these data suggest that miRNA antagonists comprised of LNA are valuable tools for identifying miRNA targets in vivo and for studying the biological role of miRNAs and miRNA-associated gene-regulatory networks in a physiological context.

Keywords: compound treatment
 
Overall design Female NMRI mice were treated at day 2 with either 25mg/kg antimiR-122 (SPC3372) or vehicle (saline). Mice were sacrificied at day 3, 9 and 23 and liver RNA assayed. Three biological replicates for each of the six groups.
 
Contributor(s) Lindow M
Citation(s) 18158304
Submission date Dec 15, 2008
Last update date Feb 11, 2019
Contact name Morten Lindow
E-mail(s) mol@santaris.com
Phone +45 4517 9867
URL http://www.santaris.com
Organization name Santaris Pharma A/S
Department microRNA
Street address Bøge Alle 3
City Hørsholm
ZIP/Postal code 2970
Country Denmark
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (21)
GSM351073 p0617_treated_day_23_rep1
GSM351074 p0617_treated_day_23_rep2
GSM351075 p0617_treated_day_23_rep3
Relations
BioProject PRJNA110285

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Supplementary file Size Download File type/resource
GSE13948_RAW.tar 73.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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