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Series GSE139325 Query DataSets for GSE139325
Status Public on Mar 01, 2020
Title Targeting CD36-PPARĪ² signaling-mediated metabolic adaptation in intratumoral Tregs primes tumors for PD-1 blockade
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Though high frequency of Tregs in tumor obstructs anti-tumor immune responses, systemic depletion of Tregs caused severe autoimmune disease in mice model. Therefore, specifically targeting intratumoral Tregs is direly needed to fight against tumor. Our study provides a novel approach to target intratumoral Tregs to enhance anti-tumor immunotherapy.
 
Overall design The goals of this study are to use NGS to perform transcriptome profiling (RNA-seq) to find the changes of the global gene expression programs among Tregs from different tissues including spleen, lymph node, and tumor. Comparison is also done between Tregs isolated from WT (FoxP3-YFPCre+/+) tumor and KO (CD36floxed FoxP3-YFPCre+/-). Total RNA was extracted and submitted to RNA-seq
 
Contributor(s) Wang H, Ho P
Citation(s) 32066953
Submission date Oct 24, 2019
Last update date May 31, 2020
Contact name Ping-Chih Ho
E-mail(s) ping-chih.ho@unil.ch
Organization name University of Lausanne
Department Department of Fundamental Oncology
Lab Immunometabolic regulation
Street address Ch. des Boveresses 155
City Epalinges
State/province Vaud
ZIP/Postal code 1066
Country Switzerland
 
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (14)
GSM4138173 Spleen_1
GSM4138174 Spleen_2
GSM4138175 Spleen_3
Relations
BioProject PRJNA579319
SRA SRP226818

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE139325_RAW.tar 3.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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