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| Status |
Public on Nov 11, 2019 |
| Title |
Transcriptome profiling of human thymic and peripheral blood CD4 + and CD8+ T cells, using RNA-seq |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We have performed high-throughput RNA sequencing to characterize the transcriptomes of primary single positive (SP) CD4+ and CD8+ T cells from infant thymic tissue, as well as primary CD4+ and CD8+ T cells from infant and adult peripheral blood, to enable the comparisons across tissues and ages
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| |
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| Overall design |
RNA-seq of 18 samples, using Illumina HiSeq2000/2500; thymic T cells - 4 replicates of CD4+ and 5 replicats of CD8+, infant blood T cells - 4 replicates of CD4+ and 3 replicates of CD8+, and 2 adult blood pools, one of CD4+ and one of CD8+ T cells.
>>>Raw data are not available for this series due to patient privacy concerns<<<
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| |
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| Contributor(s) |
Helgeland H, Lie BA |
| Citation(s) |
32393182 |
| |
| Submission date |
Oct 22, 2019 |
| Last update date |
May 26, 2020 |
| Contact name |
Benedicte Alexandra Lie |
| E-mail(s) |
b.a.lie@medisin.uio.no
|
| Organization name |
OUS
|
| Department |
Department of Medical Genetics
|
| Lab |
Genetics of autoimmunity and cancer
|
| Street address |
Kirkeveien 166, Laboratoriebygget
|
| City |
OSLO |
| ZIP/Postal code |
0450 |
| Country |
Norway |
| |
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| Platforms (2) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (18)
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| Relations |
| BioProject |
PRJNA578868 |
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