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Series GSE137719 Query DataSets for GSE137719
Status Public on Sep 20, 2019
Title ATAC-seq profiling assessing the impact of IFNg and Pictilisib on human SqCC/Y1 cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To examine differences in chromatin accessibility SqCC/Y1 cells were treated with Pictilisib to inhibit PI3K signaling in combination with DMSO or IFNg for 48 hours and ATAC-seq performed.
Overall design Triplicate samples of SqCC/Y1 cells were treated with combinations of DMSO, Pictilisib, and IFNg.
Contributor(s) Scharer CD
Citation(s) 31548239
Submission date Sep 19, 2019
Last update date Dec 20, 2019
Contact name Chris Scharer
Organization name Emory University
Department Microbiology and Immunology
Lab Chris Scharer
Street address 1510 Clifton Rd, Suite 3086A
City Atlanta
State/province GA
ZIP/Postal code 30322
Country USA
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (12)
GSM4085611 DMSO_rep1.rpm
GSM4085612 DMSO_rep2.rpm
GSM4085613 DMSO_rep3.rpm
BioProject PRJNA566384
SRA SRP222530

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE137719_ATACseq.rpm.txt.gz 7.6 Mb (ftp)(http) TXT
GSE137719_RAW.tar 2.9 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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