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Series GSE136848 Query DataSets for GSE136848
Status Public on Feb 03, 2020
Title Endothelial Heterogeneity Across Distinct Vascular Beds During Homeostasis and Inflammation Using RiboTag Strategy
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Several studies have suggested that endothelial cells which line the blood vessels in each organ significantly differ from each other, but little is known about their distinct and characteristic signatures. We assessed the brain, lung, and heart endothelial translatome using the RiboTag mouse model which allows for the direct isolation of cell-type specific ribosomes and the mRNA undergoing translation.
 
Overall design Endothelial mRNA translatome profiles of adult Cdh5CreERT2/+; Rpl22HA/+ mice were generated by RNA-Seq using Illumina HiSeq 4000
 
Contributor(s) Rehman J
Citation(s) 31944177
Submission date Sep 04, 2019
Last update date Feb 05, 2020
Contact name Jalees Rehman
E-mail(s) jalees@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood St
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (217)
GSM4059362 BrainEC-Ribotag-0hr-rep1 (Sample 1)
GSM4059363 BrainEC-Ribotag-0hr-rep2 (Sample 2)
GSM4059364 BrainEC-Ribotag-0hr-rep3 (Sample 3)
Relations
BioProject PRJNA563863
SRA SRP220306

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136848_RAW.tar 41.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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