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Series GSE136769 Query DataSets for GSE136769
Status Public on Sep 04, 2019
Title Rare mutations in the complement regulatory gene CSMD1 are associated with male and female infertility
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Infertility in men and women is a common and complex genetic trait with shared biological bases between the sexes. We performed a series of rare variant analyses across 73,185 women and men to identify genes that contribute to primary gonadal dysfunction and identified CSMD1 as a strong candidate in both sexes. CSMD1 is a complement regulatory protein on chromosome 8p23. In order to interpret and support our genetic findings, we performed detailed transcriptomic and protein-based experiments which found CSMD1 enriched at the germ-cell/somatic-cell interface in both male and female gonads. We then performed a battery of tests on Csmd1 knockout mice. Knockout males show increased rates of infertility, and present testes with severe histological degeneration and significantly increased deposition of complement C3 protein. Knockout females show significant reduction in ovarian quality and breeding success, as well as impaired branching of the mammary glands. Furthermore, double knockout of Csmd1 and C3 leads to an unexpected and non-additive reduction in breeding success, suggesting that CSMD1 and the complement pathway play an important role in the normal postnatal development of the gonads in both sexes.
 
Overall design RNA-seq of mouse whole ovaries, whole testes, and FACS purified germ cell subpopulations
 
Contributor(s) Lee A, Conrad D
Citation(s) 31604923
Submission date Sep 03, 2019
Last update date Oct 21, 2019
Contact name Don Conrad
E-mail(s) conradon@ohsu.edu
Phone 3144523893
Organization name Oregon Health & Science University
Department Division of Genetics, Oregon National Primate Research Center
Lab Conrad Lab
Street address 505 NW 185th Avenue, Mail Code L584
City Beaverton
State/province OR
ZIP/Postal code 97006
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (28)
GSM4057616 648_whole
GSM4057617 648_r7
GSM4057618 614_r7
Relations
BioProject PRJNA563627
SRA SRP220136

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136769_csmd1_rpkm_matrix.txt.gz 5.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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