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| Status |
Public on Jun 08, 2020 |
| Title |
Age-related gene expression in tissues of the long-lived red sea urchin |
| Organism |
Mesocentrotus franciscanus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The red sea urchin, Mesocentrotus franciscanus, is one the earth’s longest-lived animals, reported to live more than 100 years with indeterminate growth, life-long reproduction and no increase in mortality rate with age. To explore the idea that transcriptional stability is a key determinant of longevity and negligible senescence, age-related gene expression was examined in three tissues of the red sea urchin (Aristotle’s lantern muscle, esophagus and radial nerve cord). Genome-wide transcriptional profiling using RNA-Seq revealed remarkable stability in muscle and esophagus with very few age-related changes in gene expression. In contrast, expression of more than 900 genes was significantly altered with age in radial nerve cord including genes involved in nerve function, signaling, metabolism, cytoskeleton, transcriptional regulation and chromatin modification. Notably, there was an upregulation in expression of genes involved in synaptogenesis and axonogenesis suggesting enhanced nervous system activity with age. Among the signaling pathways affected by age, there was a downregulation in expression of key components of the mTOR signaling pathway and an upregulation of negative regulators of this pathway. This was accompanied by a reduction in expression of genes involved in protein synthesis and mitochondrial function and an increase in expression of genes that promote autophagy. Downregulation of the mTOR pathway together with the other observed changes reveals a unique age-related gene expression profile in the red sea urchin nervous system that may contribute to mitigation of the detrimental effects of aging in this long-lived animal.
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| Overall design |
18 samples in total for RNA-Seq analysis. RNA from Aristotle’s lantern muscle (ALM), esophagus (ES), and radial nerve cord (RN) from sea urchins of two size categories (Small and Large) for sea urchin collections conducted in 2010, 2011 and 2013. RNA was pooled from individuals for each tissue type and size category (ALM-S, ALM-L, ES-S, ES-L, RN-S and RN-L) and samples from each of the three sampling years were treated as independent replicates.
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| Contributor(s) |
Bodnar AG |
| Citation(s) |
32514014 |
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| Submission date |
Aug 26, 2019 |
| Last update date |
Jun 22, 2020 |
| Contact name |
Andrea G Bodnar |
| E-mail(s) |
andrea.bodnar@gmgi.org
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| Organization name |
Gloucester Marine Genomics Institute, Inc.
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| Street address |
417 Main Street
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| City |
Gloucester |
| State/province |
MA |
| ZIP/Postal code |
01930 |
| Country |
USA |
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| Platforms (1) |
| GPL27148 |
Illumina HiSeq 2000 (Mesocentrotus franciscanus) |
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| Samples (18)
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| Relations |
| BioProject |
PRJNA562282 |
| SRA |
SRP219667 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE136352_Mfranciscanus_transcripts.fasta.gz |
43.5 Mb |
(ftp)(http) |
FASTA |
| GSE136352_Mfrans_DGE_rsem-counts.txt.gz |
2.1 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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