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Series GSE136195 Query DataSets for GSE136195
Status Public on Feb 23, 2021
Title LncRNA SCIRT acts in a negative feedback loop to regulate the transcriptional program for cancer self-renewal
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Aug 22, 2019
Last update date Feb 24, 2021
Contact name Sladana Zagorac
E-mail(s) sladyana@gmail.com
Organization name Imperial College London
Street address Du Cane Road
City London
ZIP/Postal code W12 0NN
Country United Kingdom
 
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (36)
GSM4042212 MDA-MB-231 sphere-derived cells, Input DNA
GSM4042213 MDA-MB-231 sphere-derived cells, LacZ_ChartSeq 1
GSM4042214 MDA-MB-231 sphere-derived cells, LacZ_ChartSeq 2
This SuperSeries is composed of the following SubSeries:
GSE136185 Long non coding RNA (lncRNA) SCIRT regulates mitotic and stemness genes in breast cancer stem cells
GSE136186 Genome wide map of H3K27me3 histone mark remeains unaltered after silecing of lncRNA SCIRT
GSE136187 Genome wide map of EZH2 and SOX2 binding in mammospheres reveals common set of bound regions.
Relations
BioProject PRJNA561574

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136195_RAW.tar 5.5 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp

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