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Series GSE13603 Query DataSets for GSE13603
Status Public on May 22, 2009
Title Dorsal Ventral Pancreatic Bud Comparison
Organism Xenopus laevis
Experiment type Expression profiling by array
Summary During embryogenesis, the pancreas develops from separate dorsal and ventral buds, which fuse to form the mature pancreas. Little is known about the functional differences between these two buds or the relative contribution of cells derived from each portion to the pancreas after fusion. To follow the fate of dorsal or ventral bud derived cells in the pancreas after fusion, we produced chimeric Elas-GFP transgenic/wild type embryos in which either dorsal or ventral pancreatic bud cells expressed GFP. We found that ventral pancreatic cells migrate extensively into the dorsal pancreas after fusion, whereas the converse does not occur. Moreover, we found that annular pancreatic tissue is composed exclusively of ventral pancreas derived cells. To identify ventral pancreas specific genes that may play a role in pancreatic bud fusion, we isolated individual dorsal and ventral pancreatic buds, prior to fusion, from stage 38/39 Xenopus laevis tadpoles and compared their gene expression profiles. Morpholino-mediated knockdown of one of these ventral specific genes, transmembrane 4 superfamily member 3 (tm4sf3), inhibited dorsal-ventral pancreatic bud fusion as well as acinar cell differentiation. Conversely, overexpression of tm4sf3 promoted the development of annular pancreas. Our results are the first to define molecular and behavioral differences between the dorsal and ventral pancreas, and suggest an unexpected role for the ventral pancreas in pancreatic bud fusion.

Keywords: Developmental genomics
 
Overall design We analyzed two samples of dorsal and two samples of ventral pancreatic buds.
 
Contributor(s) Horb LD, Jarikji Z, Shariff F, Mandato CA, Cho KW, Horb ME
Citation(s) 19403659
Submission date Nov 13, 2008
Last update date Mar 20, 2012
Contact name Marko E Horb
E-mail(s) mhorb@mbl.edu
Phone 508-564-3764
Organization name MBL
Street address 7 MBL Street
City Woods Hole
State/province MA
ZIP/Postal code 02543
Country USA
 
Platforms (1)
GPL1318 [Xenopus_laevis] Affymetrix Xenopus laevis Genome Array
Samples (4)
GSM342975 Dorsal pancreatic bud_rep1
GSM342976 Dorsal pancreatic bud_rep2
GSM342977 Ventral pancreatic bud_rep1
Relations
BioProject PRJNA110223

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE13603_RAW.tar 7.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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