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Series GSE135891 Query DataSets for GSE135891
Status Public on Jun 09, 2020
Title Luminal Stem Cell Determinant SOX9 Controls Lineage Plasticity and Progression in Basal-Like Breast Cancer (Sox9-KO)
Organism Mus musculus
Experiment type Expression profiling by array
Summary Lineage plasticity plays an important role in the development of basal-like breast cancer (BLBC), an aggressive cancer subtype. Although studies suggest BLBC is likely to originate from luminal progenitor cells, it acquires substantial basal cell features and contains a heterogenous collection of cells exhibiting basal, luminal and bipotent phenotypes. Why luminal progenitors are prone to BLBC transformation and what drives luminal-to-basal/bipotent reprogramming remains unclear. Here we show that the transcription factor SOX9 acts as a determinant for ER– luminal stem/progenitor cells (LSPCs). SOX9 controls LSPC activity in part by activating both canonical and non-canonical NF-B signaling. Inactivation of p53 and Rb in a BLBC mouse tumor model leads to upregulation of SOX9, which drives luminal-to-bipotent reprogramming in vivo. SOX9 deletion inhibits the progression of benign, neoplastic lesions to invasive carcinoma. Furthermore, SOX9 is overexpressed and correlated with shorter relapse-free survival in human BLBC. These data show that ER– LSPC determinant SOX9 acts as a lineage-specific driver for BLBC transformation.
 
Overall design Mammary glands from three Sox9Fl/Fl animals and thee MMTV-iCre; Sox9Fl/Fl animals, in diestrus, were reduced to a single cell suspension sperately. From the Sox9Fl/Fl animals ER-negative luminal cells (Lin-,EpcamHi,CD49fLo,Sca1-negative) were sorted into Trizol LS. From the MMTV-iCre;Sox9Fl/Fl animals the same gating scheme was used, with the addition of the cells being ECFP+, to sort Sox9-null ER-negative luminal cells into Trizol LS. The resulting RNA was analyzed for gene expression differences by microarray.
 
Contributor(s) Christin JR, Guo W
Citation(s) 32521267
Submission date Aug 16, 2019
Last update date Jun 25, 2020
Contact name John Robert Christin
Phone 7186781277
Organization name Albert Einstein College of Medicine
Department Cell Biology
Lab Guo Lab
Street address 1301 Morris Park Avenue, Room 108/114
City Bronx
State/province NY
ZIP/Postal code 10461
Country USA
 
Platforms (1)
GPL23038 [Clariom_S_Mouse] Affymetrix Clariom S Assay, Mouse (Includes Pico Assay)
Samples (6)
GSM4037291 ER- Luminal Cells WT1
GSM4037292 ER- Luminal Cells WT2
GSM4037293 ER- Luminal Cells WT3
This SubSeries is part of SuperSeries:
GSE135892 Luminal Stem Cell Determinant SOX9 Controls Lineage Plasticity and Progression in Basal-Like Breast Cancer
Relations
BioProject PRJNA560490

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135891_RAW.tar 6.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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