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Series GSE134162 Query DataSets for GSE134162
Status Public on Mar 27, 2020
Title Extracellular matrix-inducing Sox9 orchestrates basal progenitor proliferation and gliogenesis in developing neocortex
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Neocortex expansion is largely based on the proliferative capacity of basal progenitors (BPs), which is increased by extracellular matrix (ECM) components via integrin signaling. Here we show that Sox9 drives expression of ECM components and that laminin 211 increases BP proliferation in embryonic mouse neocortex. Examination of Sox9 expression reveals that Sox9 is expressed in BPs of developing ferret and human, but not mouse neocortex. Functional studies by conditional Sox9 expression in the mouse BP lineage demonstrate increased BP proliferation, reduced Tbr2 and induction of Olig2 expression, indicative of premature gliogenesis. Conditional Sox9 expression also results in cell non-autonomous stimulation of BP proliferation followed by increased production of upper-layer neurons. Collectively, our findings demonstrate that Sox9 exerts concerted effects on transcription, BP proliferation, neuron production, and neurogenic as well as gliogenic BP cell fate, suggesting that Sox9 acts a master regulator in the subventricular zone to promote neocortical expansion.
 
Overall design Comparison of transcriptomes and analysis of differentially expressed genes in embryonic mouse basal progenitors, electroporated with either control construct (referred as control) or with a conditional Sox9 expression construct (referred as Sox9). Control had 3 replicates, Sox9 had 4 replicates.
 
Contributor(s) Guven A, Florio M, Brandl H, Huttner WB
Citation(s) 32191207
Submission date Jul 11, 2019
Last update date May 16, 2022
Contact name Scientific Computing Facility
Organization name MPI-CBG
Street address Pfotenhauerstrasse 108
City Dresden
ZIP/Postal code 01307
Country Germany
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (7)
GSM3938204 Control_1
GSM3938205 Control_2
GSM3938206 Control_4
Relations
BioProject PRJNA554116
SRA SRP214303

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE134162_count_matrix.txt.gz 351.5 Kb (ftp)(http) TXT
GSE134162_fpkm_matrix.txt.gz 445.0 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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