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Series GSE134086 Query DataSets for GSE134086
Status Public on Jan 16, 2024
Title Proteome-wide profiling of Transcriptional Machinery on Accessible Chromatin by biotinylated transposon (various cell lines I)
Organisms Homo sapiens; Mus musculus
Experiment type Other
Summary This study introduced a method for directly identifying the transcriptional machinery on accessible chromatin (ATAC-MS) in a proteome scale. The goals of this study are to integrate ATAC-seq with ATAC-MS to investigate the real-time in vivo transcriptional regulatory processes in organisms.
 
Overall design ATAC-seq was applied to identify changes in chromatin accessibility and transcription factors binding motifs in HeLa cells treated with TNF╬▒, MCF7 treated with E2/4HT and C2C12 during differentiation.
 
Contributor(s) Ding C, Zhang H
Citation(s) 34678055
Submission date Jul 10, 2019
Last update date Jan 17, 2024
Contact name Haizhu Zhang
E-mail(s) zhz2230@qq.com
Phone 18621062295
Organization name Fudan University
Department Institutes of Biomedical Sciences
Lab He Fuchu Lab
Street address No. 131 Dong'an Road, Xuhui District
City Shanghai
ZIP/Postal code 200032
Country China
 
Platforms (2)
GPL20795 HiSeq X Ten (Homo sapiens)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (12)
GSM3936826 Hela-0 ATAC-seq
GSM3936827 Hela-15 ATAC-seq
GSM3936828 Hela-30 ATAC-seq
This SubSeries is part of SuperSeries:
GSE174643 Proteome-wide profiling of Transcriptional Machinery on Accessible Chromatin by biotinylated transposon
Relations
BioProject PRJNA553754
SRA SRP214100

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE134086_RAW.tar 3.3 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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