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Series GSE134023 Query DataSets for GSE134023
Status Public on Dec 21, 2020
Title Next Generation Sequencing Facilitates Quantitative Analysis of Bone Marrow-Derived Macrophage Transcriptomes
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Purpose:The purpose of this study is to detect activated or silenced genes during lncRNA-GMR-deficient Bone marrow-derived macrophages and the control cells. Gene expression differences between two samples could be found using transcriptome profiling (RNA-seq) analysis.Macrophages RNA profiles were generated by deep sequencing,using Illumina.
Results: We mapped about 10 million sequence reads per sample to the mouse genome, identified hundreds of genes with significant mRNA variation between lncRNA-GMR-deficient macrophages and the control cells.
Overall design Bone marrow-derived macrophage mRNA profiles of wild type (WT) and lncRNA-GMR -/- mice were generated by deep sequencing.
Contributor(s) Wang Y, Cao X
Citation(s) 33326766
Submission date Jul 09, 2019
Last update date Dec 21, 2020
Contact name Yujia Wang
Organization name Zhejiang University
Street address Yuhangtang Road No.388
City Hangzhou
ZIP/Postal code 310058
Country China
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (2)
GSM3933483 Lnc GMR KO
GSM3933484 Lnc GMR WT
BioProject PRJNA553507
SRA SRP213862

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Supplementary file Size Download File type/resource
GSE134023_RAW.tar 5.7 Mb (http)(custom) TAR (of XLSX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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