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GEO accession:
Series GSE133241
Query DataSets for GSE133241
Status
Public on Jan 01, 2020
Title
Rrp6-mediated heterochromatin surveillance secures antigenic variation and sexual commitment of human malaria parasites
Organism
Plasmodium falciparum
Experiment type
Expression profiling by high throughput sequencing
Other
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32487761
Submission date
Jun 24, 2019
Last update date
Jun 16, 2020
Contact name
Shijun Shen
E-mail(s)
xiaoshen19930901@163.com
Phone
+86-21-13795384821
Organization name
Tongji University
Department
Bioninformatics
Lab
Jiang Lab
Street address
1239 Siping Road, Shanghai, P.R. China
City
Shanghai
State/province
Shanghai
ZIP/Postal code
200092
Country
China
Platforms (2)
GPL26835
HiSeq X Ten (Plasmodium falciparum)
GPL26836
Illumina NovaSeq 6000 (Plasmodium falciparum)
Samples (111)
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GSM3903802
WT_3D7-G7_R_rep1_RNA-seq
GSM3903803
WT_3D7-G7_R_rep2_RNA-seq
GSM3903804
WT_3D7-G7_T_rep1_RNA-seq
GSM3903805
WT_3D7-G7_T_rep2_RNA-seq
GSM3903806
WT_3D7-G7_S_rep1_RNA-seq
GSM3903807
WT_3D7-G7_S_rep2_RNA-seq
GSM3903808
WT_NF54_R_rep1_RNA-seq
GSM3903809
WT_NF54_R_rep2_RNA-seq
GSM3903810
WT_NF54_T_rep1_RNA-seq
GSM3903811
WT_NF54_T_rep2_RNA-seq
GSM3903812
WT_NF54_S_rep1_RNA-seq
GSM3903813
WT_NF54_S_rep2_RNA-seq
GSM3903814
PfRrp6-DD-1C_R_rep1_RNA-seq
GSM3903815
PfRrp6-DD-1C_R_rep2_RNA-seq
GSM3903816
PfRrp6-DD-1C_T_rep1_RNA-seq
GSM3903817
PfRrp6-DD-1C_T_rep2_RNA-seq
GSM3903818
PfRrp6-DD-1C_S_rep1_RNA-seq
GSM3903819
PfRrp6-DD-1C_S_rep2_RNA-seq
GSM3903820
PfRrp6-DD-1C-GlcN+_R_rep1_RNA-seq
GSM3903821
PfRrp6-DD-1C-GlcN+_T_rep1_RNA-seq
GSM3903822
PfRrp6-DD-1C-GlcN+_S_rep1_RNA-seq
GSM3903823
PfMaf1-OE-2.5_R_rep1_RNA-seq
GSM3903824
PfMaf1-OE-2.5_T_rep1_RNA-seq
GSM3903825
PfMaf1-OE-2.5_S_rep1_RNA-seq
GSM3903826
PfMaf1-OE-10_R_rep1_RNA-seq
GSM3903827
PfMaf1-OE-10_T_rep1_RNA-seq
GSM3903828
PfMaf1-OE-10_S_rep1_RNA-seq
GSM3903829
vector_R_rep1_RNA-seq
GSM3903830
vector_R_rep2_RNA-seq
GSM3903831
vector_T_rep1_RNA-seq
GSM3903832
vector_T_rep2_RNA-seq
GSM3903833
vector_S_rep1_RNA-seq
GSM3903834
vector_S_rep2_RNA-seq
GSM3903835
RUF6-OE_R_rep1_RNA-seq
GSM3903836
RUF6-OE_R_rep2_RNA-seq
GSM3903837
RUF6-OE_T_rep1_RNA-seq
GSM3903838
RUF6-OE_T_rep2_RNA-seq
GSM3903839
RUF6-OE_S_rep1_RNA-seq
GSM3903840
PfRrp6-DD-1B_R_rep1_RNA-seq
GSM3903841
PfRrp6-DD-4C_R_rep1_RNA-seq
GSM3903842
PfRrp6_R_rep1_RIP-seq
GSM3903843
PfRrp6_R_rep2_RIP-seq
GSM3903844
PfRrp6_T_rep1_RIP-seq
GSM3903845
PfRrp6_T_rep2_RIP-seq
GSM3903846
PfRrp6-input_R_rep1_RIP-seq
GSM3903847
PfRrp6-input_T_rep1_RIP-seq
GSM3903848
PfRrp4_R_rep1_RIP-seq
GSM3903849
PfRrp4_R_rep2_RIP-seq
GSM3903850
PfRrp4_T_rep1_RIP-seq
GSM3903851
PfRrp4_T_rep2_RIP-seq
GSM3903852
PfRrp4-input_R_rep1_RIP-seq
GSM3903853
PfRrp4-input_T_rep1_RIP-seq
GSM3903854
GFP_R_rep1_RIP-seq
GSM3903855
GFP_R_rep2_RIP-seq
GSM3903856
GFP_T_rep1_RIP-seq
GSM3903857
GFP-input_R_rep1_RIP-seq
GSM3903858
GFP-input_T_rep1_RIP-seq
GSM3903859
PfRrp6-CL_R_rep1_RIP-seq
GSM3903860
GFP-CL_R_rep1_RIP-seq
GSM3903861
WT_3D7-G7_HM-H3K9Ac_R_rep1_ChIP-seq
GSM3903862
WT_3D7-G7_HM-H3K9me3_R_rep1_ChIP-seq
GSM3903863
WT_3D7-G7_HM-input_R_rep1_ChIP-seq
GSM3903864
WT_3D7-G7_HP1_R_rep1_ChIP-seq
GSM3903865
WT_3D7-G7_HP1-input_R_rep1_ChIP-seq
GSM3903866
PfRrp6-DD-1C_HM-H3K9Ac_R_rep1_ChIP-seq
GSM3903867
PfRrp6-DD-1C_HM-H3K9me3_R_rep1_ChIP-seq
GSM3903868
PfRrp6-DD-1C_HP1_R_rep1_ChIP-seq
GSM3903869
PfRrp6-DD-1C_HM-HP1-input_R_rep1_ChIP-seq
GSM3903870
RUF6-OE_HM-H3K9Ac_R_rep1_ChIP-seq
GSM3903871
RUF6-OE_HM-H3K9me3_R_rep1_ChIP-seq
GSM3903872
RUF6-OE_HP1_R_rep1_ChIP-seq
GSM3903873
RUF6-OE_HM-HP1-input_R_rep1_ChIP-seq
GSM3903874
WT_3D7-G7_HP1_R_rep2_ChIP-seq
GSM3903875
WT_3D7-G7_HP1-input_R_rep2_ChIP-seq
GSM3903876
PfRrp6-DD-1C_R_rep1_ChIRP-seq
GSM3903877
PfRrp6-DD-1C_R_rep2_ChIRP-seq
GSM3903878
PfRrp6-DD-1C-Input_R_rep1_ChIRP-seq
GSM3903879
WT_3D7-G7_R_rep1_ChIRP-seq
GSM3903880
WT_3D7-G7_R_rep2_ChIRP-seq
GSM3903881
WT_3D7-G7-Input_R_rep1_ChIRP-seq
GSM3903882
CP-PfRrp6-DD-1C_R_rep1_ChIRP-seq
GSM3903883
CP-PfRrp6-DD-1C_R_rep2_ChIRP-seq
GSM3903884
CP-PfRrp6-DD-1C-Input_R_rep1_ChIRP-seq
GSM3903885
WT_3D7-G7_R_rep1_HiC-seq
GSM3903886
WT_3D7-G7_R_rep2_HiC-seq
GSM4037156
WT_3D7-G7_HM-H3K9Ac_R_rep2_ChIP-seq
GSM4037157
WT_3D7-G7_HM-H3K9me3_R_rep2_ChIP-seq
GSM4037158
PfRrp6-DD-1C_HM-H3K9Ac_R_rep2_ChIP-seq
GSM4037159
PfRrp6-DD-1C_HM-H3K9me3_R_rep2_ChIP-seq
GSM4037160
PfRrp6-DD-1C_HP1_R_rep2_ChIP-seq
GSM4037161
RUF6-OE_HM-H3K9Ac_R_rep2_ChIP-seq
GSM4037162
RUF6-OE_HM-H3K9me3_R_rep2_ChIP-seq
GSM4037163
RUF6-OE_HP1_R_rep2_ChIP-seq
GSM4037170
GFP_T_rep2_RIP-seq
GSM4037171
PfRrp6-DD-1C-GlcN+_R_rep2_RNA-seq
GSM4037172
PfRrp6-DD-1C-GlcN+_T_rep2_RNA-seq
GSM4037173
PfRrp6-DD-1C-GlcN+_S_rep2_RNA-seq
GSM4037174
PfMaf1-OE-2.5_R_rep2_RNA-seq
GSM4037175
PfMaf1-OE-2.5_T_rep2_RNA-seq
GSM4037176
PfMaf1-OE-2.5_S_rep2_RNA-seq
GSM4037177
PfMaf1-OE-10_R_rep2_RNA-seq
GSM4037178
PfMaf1-OE-10_T_rep2_RNA-seq
GSM4037179
PfMaf1-OE-10_S_rep2_RNA-seq
GSM4037180
RUF6-OE_S_rep2_RNA-seq
GSM4037181
PfRrp6-DD-1B_R_rep2_RNA-seq
GSM4037182
PfRrp6-DD-4C_R_rep2_RNA-seq
GSM4386889
PfRrp6-FKBP-Shld1+_R_rep1_RNA-seq
GSM4386890
PfRrp6-FKBP-Shld1+_R_rep2_RNA-seq
GSM4386891
PfRrp6-FKBP-Shld1-_R_rep1_RNA-seq
GSM4386892
PfRrp6-FKBP-Shld1-_R_rep2_RNA-seq
GSM4386893
Transfection_control_RNA-seq
This SuperSeries is composed of the following SubSeries:
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GSE133236
RNA_seq data for Rrp6 project analysis in malaria (Plasmodium falciparum)
GSE133237
RIP_seq data for Rrp6 project analysis in malaria (Plasmodium falciparum)
GSE133238
ChIP_seq data for Rrp6 project analysis in malaria (Plasmodium falciparum)
GSE133239
ChIRP_seq data for Rrp6 project analysis in malaria (Plasmodium falciparum)
GSE133240
HIC_seq data for Rrp6 project analysis in malaria (Plasmodium falciparum)
Relations
BioProject
PRJNA550424
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Format
SOFT formatted family file(s)
SOFT
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Supplementary file
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File type/resource
GSE133241_RAW.tar
628.3 Mb
(http)
(custom)
TAR (of BW, HIC)
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