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Series GSE133139 Query DataSets for GSE133139
Status Public on Feb 01, 2021
Title A first exon termination checkpoint that preferentially suppresses extragenic transcription [RNASEQ_HELA_polyA]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Wdr82 and Zc3h4 repress transcription at extragenic sites.
 
Overall design Transcriptome analysis to measure transcription in cells depleted of Wdr82, Zc3h4or other known termination factors.
 
Contributor(s) Austenaa LM, Piccolo V, Russo M, Prosperini E, Polletti S, Barozzi I, Diaferia G, Natoli G
Citation(s) 33767452
Submission date Jun 21, 2019
Last update date May 03, 2021
Contact name Viviana Piccolo
E-mail(s) viviana.piccolo@ieo.it
Organization name European Institute of Oncology (IEO)
Department Department of Experimental Oncology
Lab Gioacchino Natoli Lab
Street address Via Adamello 16
City Milano
State/province Milano
ZIP/Postal code 20139
Country Italy
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (9)
GSM3900859 HeLa_polyA_siCtl_rep1
GSM3900860 HeLa_polyA_siWdr82_rep1
GSM3900861 HeLa_polyA_siZc3h4_rep1
This SubSeries is part of SuperSeries:
GSE133109 A first exon termination checkpoint that preferentially suppresses extragenic transcription
Relations
BioProject PRJNA550082
SRA SRP202211

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133139_RAW.tar 1.9 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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