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Series GSE133106 Query DataSets for GSE133106
Status Public on Feb 01, 2021
Title A first exon termination checkpoint that preferentially suppresses extragenic transcription [RNASEQ_BMDM_polyA]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Wdr82 and Zc3h4 repress transcription at extragenic sites.
 
Overall design Transcriptome analysis to measure transcription in cells depleted of Wdr82, Zc3h4or other known termination factors.
 
Contributor(s) Austenaa LM, Piccolo V, Russo M, Prosperini E, Polletti S, Barozzi I, Diaferia G, Natoli G
Citation(s) 33767452
Submission date Jun 20, 2019
Last update date May 03, 2021
Contact name Viviana Piccolo
E-mail(s) viviana.piccolo@ieo.it
Organization name European Institute of Oncology (IEO)
Department Department of Experimental Oncology
Lab Gioacchino Natoli Lab
Street address Via Adamello 16
City Milano
State/province Milano
ZIP/Postal code 20139
Country Italy
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (6)
GSM3900155 POLYA_scr_LPS_45min Replicate1
GSM3900156 POLYA_shWDR82_LPS_45min Replicate1
GSM3900157 POLYA_scr_LPS_45min Replicate2
This SubSeries is part of SuperSeries:
GSE133109 A first exon termination checkpoint that preferentially suppresses extragenic transcription
Relations
BioProject PRJNA549951
SRA SRP202029

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133106_RAW.tar 1.3 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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