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| Status |
Public on Aug 19, 2020 |
| Title |
A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [ATAC-Seq] |
| Organism |
Populus trichocarpa |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This research uses terminal branches from a wild poplar tree to track somatic genetic, epigenetic, and transcriptional changes. Using a multi-omics approach, we aim to identify and describe mutations which arise during the lifetime of a long-lived perennial plant.
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| |
|
| Overall design |
Eight terminal branches from either side of a split Populus trichocarpa tree (4 branches each side)
|
| |
|
| Contributor(s) |
Hofmeister BT, Lu Z, Schmitz RJ |
| Citation(s) |
33023654 |
| |
| Submission date |
Jun 18, 2019 |
| Last update date |
Oct 13, 2020 |
| Contact name |
Robert J Schmitz |
| E-mail(s) |
schmitz@uga.edu
|
| Organization name |
University of Georgia
|
| Department |
Genetics
|
| Street address |
B416 Davison Life Sciences
|
| City |
Athens |
| State/province |
GA |
| ZIP/Postal code |
30602 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL26322 |
Illumina NextSeq 500 (Populus trichocarpa) |
|
| Samples (15)
|
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| This SubSeries is part of SuperSeries: |
| GSE132939 |
A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa |
|
| Relations |
| BioProject |
PRJNA549495 |
| SRA |
SRP201786 |
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