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Series GSE132815 Query DataSets for GSE132815
Status Public on Jan 13, 2020
Title Application of toxicogenomics for the risk assessment of the food contaminant acetamide
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Acetamide (CAS 60-35-5) is detected in common foods including milk, eggs, beef, and roasted coffee beans. Chronic rodent bioassays using high doses (≥1000 mg/kg/day) suggest acetamide is a group 2B possible human carcinogen due to the induction of liver tumors. Weight-of-evidence indicates acetamide is not genotoxic, and therefore a threshold response is expected. We used a toxicogenomics approach in Wistar rats gavaged daily for 7 and 28 days to determine the benchmark dose (BMD), and investigate its mode of action from differential gene expression. Two exposure experiements were carried out in succsession. An initial dose range finding experiment used male Wistar rats gavaged daily for 7 days at 0, 30, 100, 300 and 1000 mg/kd/day. A second experiment used both male and female Wistar rats exposed for 7 and 28 days to 0, 300,500,750,1000 and 1500 mg/kg/day. No treatment related changes in terminal body weight, clinical chemistry, or histopathology were observed at doses of 30, 100, or 300 mkd. At 1000 mkd, the dose reported to elicit carcinogenesis, liver weights decreased 1.3-fold with the presence of single cell necrosis, hepatocyte vacuolization, and increased mitotic activity consistent with a 4.2 fold increase in the cell proliferation index. Accordingly, plasma ALT and AST were increased 2.0- and 2.2-fold, respectively. RNA-Seq analysis identified 1 differentially expressed gene at 300 mkd, and 2,685 at 1000 mkd (|fold-change| ≥ 1.5 and FDR ≤ 0.05). Down-regulated genes were associated with lipid metabolism while up-regulated genes included cell signaling, immune response, and cell cycle functions. Collectively, these results revealed a no-observable adverse effect level (NOAEL) and no-observed-transcriptional effect level (NOTEL) at 300 mkd, warranting further investigation at doses between 300 and 1000 mkd to identify the benchmark dose (BMD). Functional enrichment indicates perturbation of cell cycle and lipid metabolism, though a more refined dose-response evaluation will be needed to demonstrate dose-dependent effects related to the MOA of acetamide. Funding by the Bill and Melinda Gates Foundation (OPP1142801).
 
Overall design Five biological replicates at each exposure for each time point.
 
Contributor(s) Black M, Nault R
Citation(s) 31881176
Submission date Jun 17, 2019
Last update date Jan 13, 2020
Contact name Michael B. Black
E-mail(s) mblack@scitovation.com
Phone 919-354-5223
Organization name Scitovation, LLC.
Street address 100 Capitola Dr., Suite 106
City Research Triangle Park
State/province North Carolina
ZIP/Postal code 27713
Country USA
 
Platforms (1)
GPL20084 Illumina NextSeq 500 (Rattus norvegicus)
Samples (145)
GSM3892831 M_01_7d_0: Rv2521
GSM3892832 M_02_7d_0: Rv2522
GSM3892833 M_03_7d_0: Rv2523
Relations
BioProject PRJNA549167
SRA SRP201587

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE132815_Acetamide_female_exp2_28Day_counts.txt.gz 719.4 Kb (ftp)(http) TXT
GSE132815_Acetamide_female_exp2_7d_counts.txt.gz 721.5 Kb (ftp)(http) TXT
GSE132815_Acetamide_male_exp1_7d_counts.txt.gz 585.2 Kb (ftp)(http) TXT
GSE132815_Acetamide_male_exp2_28Day_counts.txt.gz 709.2 Kb (ftp)(http) TXT
GSE132815_Acetamide_male_exp2_7d_counts.txt.gz 712.4 Kb (ftp)(http) TXT
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