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Series GSE132642 Query DataSets for GSE132642
Status Public on Nov 25, 2019
Title Droplet-based single-cell RNA-sequencing of mouse and naked mole-rat spleen and circulating immune cells, in natural conditions, following lipopolysaccharide (LPS) challanege, and saline control
Organisms Mus musculus; Heterocephalus glaber
Experiment type Expression profiling by high throughput sequencing
Summary Single-cell RNA-sequencing was performed in the mouse and naked mole-rat immune systems in order to map and compare their immune cell repertoirs and their cell-specific gene-expression responses to LPS challenge
 
Overall design Single-cell RNA-sequencing was obtained from: 1. 4 adult mouse and 4 adult naked mole-rat spleens in duplicate; 2. 4 adult mouse and 3 adult naked mole-rat circulating immune cells; 3. 2 adult mouse and 2 adult naked mole-rat spleens following LPS challenege in duplicate; 4. 2 adult mouse and 2 adult naked mole-rat spleens following saline administration in duplicate; 5. 2 adult mouse and 2 adult naked mole-rat circulating immune cells following LPS challenege in duplicate; 4. 2 adult mouse and 2 adult naked mole-rat circulating immune cells following saline administration in duplicate;
 
Contributor(s) Rubinstein N, Hilton H, Buffenstein R
Citation(s) 31751331
Submission date Jun 12, 2019
Last update date Nov 25, 2019
Contact name Nimrod Daniel Rubinstein
E-mail(s) nrubinstein@calicolabs.com
Phone 9193082834
Organization name Calico
Street address 1170 Veterans blvd
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL26775 Illumina HiSeq 4000 (Heterocephalus glaber)
Samples (63)
GSM3885302 naked mole-rat spleen sample 1 replicate 1
GSM3885303 naked mole-rat spleen sample 1 replicate 2
GSM3885304 naked mole-rat spleen sample 2 replicate 1
Relations
BioProject PRJNA548723
SRA SRP201320

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Supplementary file Size Download File type/resource
GSE132642_RAW.tar 166.3 Mb (http)(custom) TAR (of CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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