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Series GSE131912 Query DataSets for GSE131912
Status Public on Dec 28, 2020
Title CDK2-mediated TNFa Upregulation as a Mechanism of Cytotoxicity in Acute Leukemia
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Although inhibitors of the kinases CHK1, ATR and WEE1 are undergoing clinical testing, it remains unclear how these three classes of agents kill susceptible cells and whether they utilize the same cytotoxic mechanism. Here we observed that CHK1 inhibition induces apoptosis in a subset of acute leukemia cell lines, including TP53 null acute myeloid leukemia (AML) and BCR/ABL-positive acute lymphoid leukemia (ALL), in vitro and inhibits leukemic colony formation in clinical AML samples ex vivo. In further studies, CHK1 downregulation or CHK1 inhibitor treatment triggered signaling in sensitive human acute leukemia cell lines that involved CDK2 activation followed by AP1-dependent TNF transactivation, TNF production and engagement of a TNFR1- and BID-dependent apoptotic pathway. AML lines that were intrinsically CHK1 inhibitor resistant exhibited high CHK1 expression and were sensitized by CHK1 downregulation. Signaling through this same CDK2  AP1  TNF cytotoxic pathway was also initiated by ATR or WEE1 inhibitors in vitro and during CHK1 inhibitor treatment of AML xenografts in vivo. Collectively, these observations not only identify new contributors to antileukemic cell action of CHK1, ATR and WEE1 inhibitors, but also delineate a previously undescribed pathway leading from aberrant CDK2 activation to death ligand-induced killing that can potentially be exploited for acute leukemia treatment.
 
Overall design Compare RNAseq data from ML1 or U937 in different treatments to check significant mRNA change for potential TNFa transcription factors
 
Contributor(s) Kaufmann S, Li H
Citation(s) 33414171
Submission date May 29, 2019
Last update date Mar 29, 2021
Contact name Hu Li
E-mail(s) li.hu@mayo.edu
Organization name Mayo Clinic
Department Molecular Pharmacology & Experimental Therapeutics
Lab Systems Biology and Pharmacology
Street address 200 First Street, Gonda Building G19-408
City Rochester
State/province MN
ZIP/Postal code 55904
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (15)
GSM3827189 ML1_diluent_1
GSM3827190 ML1_diluent_2
GSM3827191 ML1_diluent_3
Relations
BioProject PRJNA545305
SRA SRP199764

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE131912_counts.txt.gz 647.3 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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