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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 14, 2019 |
| Title |
Thyroid hormone regulates distinct paths to maturation in pigment cell lineages |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Early and post-embryonic neural crest-derived lineages in the zebrafish trunk in response to thyroid hormone modulation
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| Overall design |
Single-cell RNA-seq experiments were performed on the 10X Genomics platform from FAC sorted, Sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone.
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| Contributor(s) |
Saunders LM, Parichy DM, Trapnell C |
| Citation(s) |
31140974, 33933422 |
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| Submission date |
May 13, 2019 |
| Last update date |
May 02, 2023 |
| Contact name |
David Parichy |
| Organization name |
University of Virginia
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| Department |
Biology
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| Street address |
409 McCormick Road, Department of Biology, PLSB 339
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| City |
Charlottesville |
| State/province |
VA |
| ZIP/Postal code |
22903 |
| Country |
USA |
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| Platforms (1) |
| GPL20828 |
Illumina NextSeq 500 (Danio rerio) |
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| Samples (14)
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| GSM3764566 |
Neural crest derived cells from euthyroid, post-embryonic zebrafish trunks, biological replicate 1 |
| GSM3764567 |
Neural crest derived cells from euthyroid, post-embryonic zebrafish skins, biological replicate 2 |
| GSM3764568 |
Neural crest derived cells from euthyroid, post-embryonic zebrafish trunks, biological replicate 3 |
| GSM3764569 |
Neural crest derived cells from euthyroid, post-embryonic zebrafish trunks, biological replicate 4 |
| GSM3764570 |
Neural crest derived cells from euthyroid, post-embryonic zebrafish trunks, biological replicate 5 |
| GSM3764571 |
Neural crest derived cells from euthyroid, post-embryonic zebrafish trunks, biological replicate 6 |
| GSM3764572 |
Neural crest derived cells from hypothyroid, juvenile zebrafish trunks, biological replicate 1 |
| GSM3764573 |
Neural crest derived cells from hypothyroid, post-embryonic zebrafish skins, biological replicate 2 |
| GSM3764574 |
Neural crest derived cells from hypothyroid, post-embryonic zebrafish trunks, biological replicate 3 |
| GSM3764575 |
Neural crest derived cells from hypothyroid, post-embryonic zebrafish trunks, biological replicate 4 |
| GSM3764576 |
Neural crest derived cells from hypothyroid, post-embryonic zebrafish trunks, biological replicate 5 |
| GSM3764577 |
Neural crest derived cells from hypothyroid, post-embryonic zebrafish trunks, biological replicate 6 |
| GSM3764578 |
Neural crest derived cells from hypothyroid, post-embryonic zebrafish trunks, biological replicate 7 |
| GSM3764579 |
Neural crest derived cells from 5 dpf , euthyroid zebrafish tails |
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| Relations |
| BioProject |
PRJNA542704 |
| SRA |
SRP198298 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE131136_NC-deriv_5dpf_metadata.tsv.gz |
54.1 Kb |
(ftp)(http) |
TSV |
| GSE131136_NC-deriv_eu_hypothyroid_metadata.tsv.gz |
551.3 Kb |
(ftp)(http) |
TSV |
| GSE131136_all_NC_barcodes.tsv.gz |
122.0 Kb |
(ftp)(http) |
TSV |
| GSE131136_all_NC_genes.tsv.gz |
205.3 Kb |
(ftp)(http) |
TSV |
| GSE131136_all_NC_matrix.mtx.gz |
72.8 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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