GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE130270
Query DataSets for GSE130270
Status
Public on Sep 25, 2019
Title
Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome variation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31666703
Submission date
Apr 24, 2019
Last update date
Nov 15, 2019
Contact name
Frederick W Alt
E-mail(s)
jianqiao.hu@childrens.harvard.edu
Organization name
Boston Children's Hospital
Department
PCMM
Lab
Alt
Street address
1 Blackfan Circle
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (2)
GPL16417
Illumina MiSeq (Mus musculus)
GPL21626
NextSeq 550 (Mus musculus)
Samples (149)
Less...
More...
GSM3734789
Splenic_nonsti_iEm_1
GSM3734790
Splenic_nonsti_iEm_2
GSM3734791
Splenic_nonsti_iEm_3
GSM3734792
Splenic_aCD40_IL4_iEm_1
GSM3734793
Splenic_aCD40_IL4_iEm_2
GSM3734794
Splenic_aCD40_IL4_iEm_3
GSM3734798
Splenic_nonsti_3RR_1
GSM3734799
Splenic_nonsti_3RR_2
GSM3734800
Splenic_nonsti_3RR_3
GSM3734801
Splenic_aCD40_IL4_3RR_1
GSM3734802
Splenic_aCD40_IL4_3RR_2
GSM3734803
Splenic_aCD40_IL4_3RR_3
GSM3734816
CH12NCdel_nonsti_3RR_1
GSM3734817
CH12NCdel_nonsti_3RR_2
GSM3734819
CH12NCdel_sti_3RR_1
GSM3734820
CH12NCdel_sti_3RR_2
GSM3734822
Iadel_sti_3RR_1
GSM3734823
Iadel_sti_3RR_2
GSM3734834
CH12F3NCdel_sti_iCBE_1-1
GSM3734835
CH12F3NCdel_sti_iCBE_1-2
GSM3734836
CH12F3NCdel_sti_iCBE_1-3
GSM3734840
i3CBEc_sti_iCBE_1-1
GSM3734841
i3CBEc_sti_iCBE_1-2
GSM3734842
i3CBEc_sti_iCBE_1-3
GSM3734845
CH12F3NCdel_sti_iEm_1-2
GSM3734846
i3CBEc_sti_iEm_1-2
GSM3734847
CH12F3NCdel_sti_iEm_2
GSM3734849
i3CBEc_sti_iEm_2
GSM3734850
CH12F3NCdel_sti_iEm_3
GSM3734852
i3CBEc_sti_iEm_3
GSM3734853
Iadel_sti_iCBE_2-1
GSM3734854
Iadel_sti_iCBE_2-2
GSM3734855
Iadel_sti_iCBE_2-3
GSM3734856
Iadel-i3CBEc_iCBE_2-1
GSM3734857
Iadel-i3CBEc_iCBE_2-2
GSM3734858
Iadel-i3CBEc_iCBE_2-3
GSM3734859
Iadel_sti_iEm_2-1
GSM3734860
Iadel_sti_iEm_2-2
GSM3734861
Iadel_sti_iEm_2-3
GSM3734862
Iadel-i3CBEc_iEm_2-1
GSM3734863
Iadel-i3CBEc_iEm_2-2
GSM3734864
Iadel-i3CBEc_iEm_2-3
GSM3734865
Iadel_sti_3RR_2-1
GSM3734866
Iadel_sti_3RR_2-2
GSM3734867
Iadel_sti_3RR_2-3
GSM3734868
Iadel-i3CBEc_3RR_2-1
GSM3734869
Iadel-i3CBEc_3RR_2-2
GSM3734870
Iadel-i3CBEc_3RR_2-3
GSM3734871
CH12F3NCdel_nonsti_input
GSM3734872
CH12F3NCdel_aCD40_IL4_TGFb_input
GSM3734873
Splenic_nonsti_input
GSM3734874
Splenic_aCD40_IL4_input
GSM3734875
CH12F3NCdel_nonsti_NIPBL
GSM3734876
CH12F3NCdel_aCD40_IL4_TGFb_NIPBL
GSM3734877
Splenic_nonsti_NIPBL_1
GSM3734878
Splenic_aCD40_IL4_NIPBL_1
GSM3734879
Splenic_nonsti_NIPBL_2
GSM3734880
Splenic_aCD40_IL4_NIPBL_2
GSM3734881
Splenic_nonsti_NIPBL_3
GSM3734882
Splenic_aCD40_IL4_NIPBL_3
GSM3734883
CH12F3NCD 1
GSM3734884
CH12F3NCD 2
GSM3734885
CH12F3NCD 3
GSM3734886
IaD 1
GSM3734887
IaD 2
GSM3734888
IaD 3
GSM3734889
IaD_4
GSM3734890
IaD_5
GSM3734891
IaD_6
GSM3734892
IaD-i3CBEc_1
GSM3734893
IaD-i3CBEc_2
GSM3734894
IaD-i3CBEc_3
GSM3734895
CH12F3NCD_4
GSM3734896
CH12F3NCD_5
GSM3734897
CH12F3NCD_6
GSM3734904
i3CBEc_1
GSM3734905
i3CBEc_2
GSM3734906
i3CBEc_3
GSM3734907
i3CBEc-3'CBEsD_1
GSM3734908
i3CBEc-3'CBEsD_2
GSM3734909
i3CBEc-3'CBEsD_3
GSM3734910
Splenic_nonsti_1
GSM3734911
Splenic_nonsti_2
GSM3734913
Splenic_aCD40_IL4_1
GSM3734914
Splenic_aCD40_IL4_2
GSM3734915
Splenic_aCD40_IL4_3
GSM3734919
CH12F3NCdel_nonsti_1
GSM3734920
CH12F3NCdel_nonsti_2
GSM3734921
CH12F3NCdel_nonsti_3
GSM3734922
CH12F3NCdel_sti_1
GSM3734923
CH12F3NCdel_sti_2
GSM3734924
CH12F3NCdel_sti_3
GSM3734926
Iadel_sti_1
GSM3734927
Iadel_sti_2
GSM3734931
iadel-i3CBEc_sti_1
GSM3734932
iadel-i3CBEc_sti_2
GSM3734933
iadel-i3CBEc_sti_3
GSM4030072
CH12NCdel_nonsti_iEm_1
GSM4030073
CH12NCdel_nonsti_iEm_2
GSM4030074
CH12NCdel_nonsti_iEm_3
GSM4030075
CH12NCdel_sti_iEm_1
GSM4030076
CH12NCdel_sti_iEm_2
GSM4030077
CH12NCdel_sti_iEm_3
GSM4030078
Iadel_sti_iEm_1
GSM4030079
Iadel_sti_iEm_2
GSM4030080
Iadel_sti_iEm_3
GSM4030081
CH12NCdel_nonsti_3RR_3
GSM4030082
CH12NCdel_sti_3RR_3
GSM4030083
Iadel_sti_3RR_3
GSM4030084
Iadel_nonsti_iEm_1_1
GSM4030085
Iadel_sti_iEm_1_1
GSM4030086
Iadel_nonsti_iEm_2_1
GSM4030087
Iadel_sti_iEm_2_1
GSM4030088
i3CBEs_sti_iCBE_2_1
GSM4030089
i3CBEs_sti_iCBE_2_2
GSM4030090
i3CBEs_sti_iCBE_2_3
GSM4030091
i3CBEs_3CBEdel_sti_iCBE_2_1
GSM4030092
i3CBEs_3CBEdel_sti_iCBE_2_2
GSM4030093
i3CBEs_3CBEdel_sti_iCBE_2_3
GSM4030094
Splenic_aCD40_IL4_3CBE1_1
GSM4030095
Splenic_aCD40_IL4_3CBE1_2
GSM4030096
Splenic_aCD40_IL4_3CBE7_1
GSM4030097
Splenic_aCD40_IL4_3CBE7_2
GSM4030098
Splenic_aCD40_IL4_3CBE7_3
GSM4030099
CH12F3NCdel_nonsti_NIPBL_2
GSM4030100
CH12F3NCdel_aCD40_IL4_TGFb_NIPBL_2
GSM4030101
i3CBEs_aCD40_IL4_TGFb_input
GSM4030102
CH12F3NCdel_nonsti_Rad21_1
GSM4030103
CH12F3NCdel_aCD40_IL4_TGFb_Rad21_1
GSM4030104
CH12F3NCdel_nonsti_Rad21_2
GSM4030105
CH12F3NCdel_aCD40_IL4_TGFb_Rad21_2
GSM4030106
CH12F3NCdel_nonsti_Rad21_3
GSM4030107
CH12F3NCdel_aCD40_IL4_TGFb_Rad21_3
GSM4030108
CH12F3NCdel_aCD40_IL4_TGFb_Rad21_4
GSM4030109
i3CBEs_aCD40_IL4_TGFb_Rad21_1
GSM4030110
i3CBEs_aCD40_IL4_TGFb_Rad21_2
GSM4030111
i3CBEs_aCD40_IL4_TGFb_Rad21_3
GSM4030112
Splenic_nonsti_Rad21_1
GSM4030113
Splenic_aCD40_IL4_Rad21_1
GSM4030114
Splenic_nonsti_Rad21_2
GSM4030115
Splenic_aCD40_IL4_Rad21_2
GSM4030116
Splenic_nonsti_Rad21_3
GSM4030117
Splenic_aCD40_IL4_Rad21_3
GSM4030118
Splenic_nonsti_3
GSM4030119
Iadel_nonsti_1
GSM4030120
Iadel_nonsti_2
GSM4030121
Iadel_nonsti_3
GSM4030122
Iadel_sti_3
GSM4030123
Iadel_sti_4
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE130263
Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching [3C-HTGTS]
GSE130264
Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching [ChIP-Seq]
GSE130265
Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching [CSR-HTGTS-Seq]
GSE130266
Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching [GRO-Seq]
Relations
BioProject
PRJNA534486
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE130270_RAW.tar
31.9 Gb
(http)
(custom)
TAR (of BEDGRAPH, BROADPEAK, BW, TXT)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|