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Series GSE129890 Query DataSets for GSE129890
Status Public on Apr 17, 2019
Title Single nucleotide variants (SNVs) associated with cutaneous melanoma (CM) risk and prognosis
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Genome variation profiling by SNP array
Summary Abnormalities in pigmentation-related genes alter CM risk and prognosis.
Overall design Two hundred and six individuals were analyzed in the first stage. Genomic DNA was extracted from leukocytes of peripheral blood of 103 CM patients and 103 controls using the QIAamp DNA Blood Midi Kit (Qiagen®, Canada), following manufacturer’s instructions
Contributor(s) Oliveira C, Lourenço GJ, Leme CS
Citation(s) 32699307
Submission date Apr 16, 2019
Last update date Jul 27, 2020
Contact name Benilton Sa Carvalho
Organization name Universidade Estadual de Campinas
Department Medical Genetics
Lab Bioinformatics
Street address Tessália Vieira de Camargo, 126
City Campinas
State/province Sao Paulo
ZIP/Postal code 13083887
Country Brazil
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (206)
GSM3724265 Case 0001
GSM3724266 Case 0002
GSM3724267 Case 0003
BioProject PRJNA533122

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129890_RAW.tar 5.5 Gb (http)(custom) TAR (of CEL)
GSE129890_alleleA.tsv.gz 326.0 Mb (ftp)(http) TSV
GSE129890_alleleB.tsv.gz 324.2 Mb (ftp)(http) TSV
GSE129890_calls.tsv.gz 43.3 Mb (ftp)(http) TSV
GSE129890_confs.tsv.gz 1.1 Gb (ftp)(http) TSV
Processed data are available on Series record

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