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Series GSE129822 Query DataSets for GSE129822
Status Public on Sep 25, 2020
Title ATAC-seq for MDCKII 3D and 2D epithelial morphogenesis
Organism Canis lupus familiaris
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed ATAC-seq experiments for MDCKII 3D cells, confluent 2D cells as well as seeding day0 cells to study if transcriptome changes during epithelial morphogenesis is associated with chromatin changes.
Overall design Examination of open chromatin during epithelial morphogenesis in MDCKII cells.
Contributor(s) Zhao S, Wang T
Citation(s) 33089114
Submission date Apr 15, 2019
Last update date Oct 27, 2020
Contact name Shaying Zhao
Organization name University of Georgia
Lab Shaying Zhao
Street address B304B Life Sciences, 120 Green Street
State/province GA
ZIP/Postal code 30602
Country USA
Platforms (1)
GPL21400 Illumina NextSeq 500 (Canis lupus familiaris)
Samples (7)
GSM3722642 3D_1 ATAC-seq
GSM3722643 3D_2 ATAC-seq
GSM3722644 2D_1 ATAC-seq
This SubSeries is part of SuperSeries:
GSE129824 ATAC-seq and RNA-seq for MDCKII 3D and 2D epithelial morphogenesis
BioProject PRJNA532907
SRA SRP192606

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129822_RAW.tar 1.6 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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