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Series GSE129518 Query DataSets for GSE129518
Status Public on May 09, 2019
Title Circadian gene expression in mouse gastrocnemius muscle after deletion of SIRT1 in SF1 neurons
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Loss of synchrony between geophysical time and insulin action predisposes to metabolic diseases. Yet, the brain and peripheral pathways linking proper insulin effect to diurnal changes in light/dark and feeding/fasting inputs are poorly understood. Here, we show that insulin sensitivity of several metabolically relevant tissues fluctuates during the 24-hour period. For example, in mice insulin sensitivity of skeletal muscle, liver, and adipose tissue is lowest during the light period. Mechanistically, by performing loss- and gain-of-light-action and food-restriction experiments, we demonstrate that SIRT1 in steroidogenic factor 1 (SF1) neurons of the ventromedial hypothalamic nucleus (VMH) conveys photic inputs toentrain the biochemical and metabolic action of insulin in skeletal muscle. These findings uncover a critical light-SF1-neuron-skeletal-muscle axis that acts to finely tune diurnal changes in insulin sensitivity and reveal a light regulatory mechanism of skeletal muscle function.
 
Overall design Gastrocnemius muscle was dissected from 10-week old mice with deletion of SIRT1 in SF1 neurons (Sf1-Cre; Sirt1loxP/loxP) and intact controls (Sirt1loxP/loxP) at different Zeitgebers (0, 6, 12, 18).
 
Contributor(s) Aras E, Ramadori G, Coppari R, Corsi PS, Baldi P, Kinouchi K, Liu Y, Chen S
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Submission date Apr 09, 2019
Last update date May 09, 2019
Contact name Siwei Chen
E-mail(s) siweic@uci.edu
Organization name University of California, Irvine
Department Computer Science
Lab Pierre Baldi
Street address 66304 Verano Road South
City irvine
State/province CA
ZIP/Postal code 92617
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (32)
GSM3714755 831 Control
GSM3714756 832 Control
GSM3714757 835 Control
Relations
BioProject PRJNA531886
SRA SRP191799

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129518_Genes2.FPKM.txt.gz 2.2 Mb (ftp)(http) TXT
GSE129518_SKE2_Crick_table.biocycle.xls.gz 2.0 Mb (ftp)(http) XLS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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