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| Status |
Public on Sep 02, 2019 |
| Title |
RNA-seq analysis to identify Tricholoma matsutake mycorrhiza specific gene |
| Organisms |
Tricholoma matsutake; Pinus densiflora |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Bioproject:PRJNA509493; Biosample:SAMN10583662; To identify T. matsutake mycorrhiza specific gene, transcriptomes were comapred among mycorrhiza (pine with T. matsutake), T. matsutake mycelia, T. matsutake fruiting body and pine root (without T. matsutake)
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| Overall design |
Comparing mRNA profiles among mycorrhiza co-culturedwith pine root for 6 months/T. matsutake 6 months cultured mycelia on agar plate/fruiting body collected in wild, and mycorrhiza co-cultured with pine root for 6 months/pine root cultured 6 month without T. matsutake, in triplicate, using Illumina Next-seq
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| Contributor(s) |
Sakamoto Y, Sato S |
| Citation missing |
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| BioProject |
PRJNA509493 |
| |
| Submission date |
Mar 08, 2019 |
| Last update date |
Sep 03, 2019 |
| Contact name |
Yuichi Sakamoto |
| E-mail(s) |
sakamoto@ibrc.or.jp
|
| Organization name |
Iwate Biotechnology Research Center
|
| Department |
Department of Bioresource
|
| Lab |
mushroom team
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| Street address |
Narita 22-174-4
|
| City |
Kitakami |
| State/province |
Iwate |
| ZIP/Postal code |
024-0003 |
| Country |
Japan |
| |
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| Platforms (3) |
| GPL26269 |
Illumina NextSeq 500 (Pinus densiflora; Tricholoma matsutake) |
| GPL26270 |
Illumina NextSeq 500 (Tricholoma matsutake) |
| GPL26271 |
Illumina NextSeq 500 (Pinus densiflora) |
|
| Samples (12)
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| Relations |
| SRA |
SRP173973 |
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