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Series GSE126753 Query DataSets for GSE126753
Status Public on Mar 27, 2019
Title CAR T cell trogocytosis and cooperative killing regulate tumour antigen escape
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Chimeric antigen receptors (CARs) are synthetic receptors for antigen that reprogram T cell specificity, function and persistence. Patient-derived CAR T cells have demonstrated remarkable efficacy against a range of B-cell malignancies, and early trial results suggest activity in multiple myeloma. Despite high complete response rates, relapses occur in a large fraction of patients, some of which are antigen-negative and others antigen-low. Unlike mechanisms resulting in complete and permanent antigen loss, those leading to antigen-low tumour escape remain obscure. In murine leukaemia models, we show that CARs provoke reversible antigen loss through trogocytosis, an active process whereby target antigen is transferred to T cells, thereby decreasing target density on tumour cells and abating T cell activity by promoting fratricide killing and exhaustion. These mechanisms affect both CD28 and 4-1BB-based CARs, albeit differentially, depending on antigen density. They can be offset by cooperative killing and combinatorial targeting.
 
Overall design Examination of mRNA CD19 expression in NALM6 retrieved from relapsed mice treated with 19-BBζ CAR T cells (D0), retrieved NALM6 after ex-vivo culture (D6), and NALM6 culture in vitro (ctrl).
 
Contributor(s) Hamieh M, Sadelain M
Citation(s) 30918399
Submission date Feb 19, 2019
Last update date Apr 02, 2019
Contact name Yu-Jui Ho
E-mail(s) hoy@mskcc.org
Organization name Memorial Sloan Kettering Cancer Center
Department Cancer Biology & Genetics Program
Street address 417 E 68th St
City New York
State/province New York
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (17)
GSM3612189 M1-D0
GSM3612190 M2-D0
GSM3612191 M3-D0
Relations
BioProject PRJNA523212
SRA SRP186290

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE126753_Hamieh_Proj_06934_B_htseq_all_samples.txt.gz 1.2 Mb (ftp)(http) TXT
GSE126753_Hamieh_counts_scaled_DESeq.xls.gz 1.9 Mb (ftp)(http) XLS
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Raw data are available in SRA
Processed data are available on Series record

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