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Series GSE126690 Query DataSets for GSE126690
Status Public on Feb 18, 2020
Title Macrophage ATP citrate lyase deficiency stabilizes atherosclerotic plaques
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Macrophages represent a major immune cell population in atherosclerotic plaques and play central role in the progression of this lipid-driven chronic inflammatory disease. Targeting immunometabolism is proposed as a strategy to revert aberrant macrophage activation to improve disease outcome. Here, we show ATP citrate lyase (Acly) to be activated in inflammatory macrophages and human atherosclerotic plaques. We demonstrate that myeloid Acly deficiency induces a stable plaque phenotype characterized by increased collagen deposition and fibrous cap thickness, along with a smaller necrotic core. In-depth functional, lipidomic, and transcriptional characterization indicate deregulated fatty acid and cholesterol biosynthesis and reduced liver X receptor (LXR) activation within the macrophages in vitro. This results in macrophages that are more prone to undergo apoptosis, whilst presenting increased phagocytosis of apoptotic cells. Together, our results indicate that targeting macrophage metabolism improves atherosclerosis outcome and we reveal Acly as a promising therapeutic target to stabilize atherosclerotic plaques.
 
Overall design RNA-seq of bone marrow-derived macrophages from female AclyM-WT and AclyM-KO mice.
 
Contributor(s) Baardman J, Verberk S, van der Velden S, Gijbels M, van Roomen C, Sluimer J, Broos J, Griffith G, Prange K, van Weeghel M, Lakbir S, Molenaar D, Meinster E, Neele A, Kooij G, de Vries H, Lutgens E, Wellen K, de Winther M, Van den Bossche J
Citation(s) 33293558
Submission date Feb 18, 2019
Last update date Dec 15, 2020
Contact name Menno de Winther
E-mail(s) m.dewinther@amc.uva.nl
Phone +31205666762
Organization name Academic Medical Center University of Amsterdam
Department Medical Biochemistry
Lab Experimental Vascular Biology
Street address Meibergdreef 9
City Amsterdam
ZIP/Postal code 1105AZ
Country Netherlands
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (6)
GSM3611353 KON_rep1
GSM3611354 KON_rep2
GSM3611355 KON_rep3
Relations
BioProject PRJNA522993
SRA SRP186170

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Supplementary file Size Download File type/resource
GSE126690_readcounts.txt.gz 629.7 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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