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Series GSE126336 Query DataSets for GSE126336
Status Public on Nov 13, 2019
Title Circadian clock genes and the vitamin A pathway regulate seasonal photoperiodic responsiveness in an insect
Organism Danaus plexippus
Experiment type Expression profiling by high throughput sequencing
Summary Seasonal adaptation to changes in light:dark regimes (i.e., photoperiod) allows organisms living at temperate latitudes to anticipate environmental change and adjust their physiology and behavior accordingly. The circadian system has been implicated in measurement and response to changes in photoperiod in nearly all animals studied so far (Saunders, 2011). The use of both traditional and non-traditional model insects with robust seasonal responses has recently genetically demonstrated the central role that clock genes play in photoperiodic response. Yet, the molecular pathways involved in insect photoperiodic responses remain largely unknown. Here, using the Eastern North American monarch butterfly (Reppert et al, 2016; Denlinger et al, 2017), we identified the vitamin A pathway as a novel pathway downstream of the circadian clock mediating insect photoperiod responsiveness. We found that interrupting clock function by disrupting circadian activation and repression abolishes photoperiodic responses in reproductive output, providing a functional link between clock genes and photoperiodic responsiveness in the monarch. Through transcriptomic approaches, we identified a molecular signature of seasonal-specific rhythmic gene expression in the brain, the organ known to function in photoperiodic reception in both Lepidoptera and some flies (Bowen et al, 1984; Saunders & Cymborowski, 1996). Among genes differentially expressed between both long and short photoperiods and between seasonal forms, several were belonging to the vitamin A pathway. The rhythmic expression of all of these genes was abolished in clock-deficient mutants. We also showed that a CRISPR/Cas9-mediated loss-of-function mutation in the pathway’s rate-limiting enzyme, ninaB1, impaired the monarch ability to respond to the photoperiod independently of visual function in the compound eye and without affecting circadian rhythms. Our finding that the vitamin A pathway is a key mediator of photoperiodic responses in insects could have broad implications for understanding the molecular mechanisms underlying photoperiodism.
 
Overall design Determine the identify of rhythmic genes underlying photoperiodic responses in monarch butterfly brains using RNA-seq.
 
Contributor(s) Iiams SE, Lugena AB, Zhang Y, Hayden A, Merlin C
Citation(s) 31767753
Submission date Feb 09, 2019
Last update date Feb 12, 2020
Contact name Christine Merlin
E-mail(s) cmerlin@bio.tamu.edu
Phone (979)862-2457
Organization name Texas A&M University
Department Biology
Lab Biological Sciences Building East Room 102
Street address 3258 TAMU
City College Station
State/province TX
ZIP/Postal code 77843-3258
Country USA
 
Platforms (1)
GPL25611 Illumina HiSeq 2500 (Danaus plexippus)
Samples (48)
GSM3596749 RNAseq LP ZT01 rep1
GSM3596750 RNAseq LP ZT01 rep2
GSM3596751 RNAseq LP ZT04 rep1
Relations
BioProject PRJNA521633
SRA SRP185352

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE126336_RAW.tar 18.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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