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Series GSE126091 Query DataSets for GSE126091
Status Public on Feb 06, 2019
Title The effect of anthelmintic drugs on human leukocyte gene expression in vitro
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Ivermectin and Diethylcarbamizine (DEC) are used in the elimination programs for lymphatic filariasis and onchocerciasis. It has been proposed that the drugs may have an effect on the host immune system that aids in parasite killing/elimination. We tested this directly by exposing human neutrophils and monocytes to the drugs in vitro.
 
Overall design Five biological replicates were performed. Neutrophils and peripheral blood mononuclear cells were purified from five different human donors and exposed to ivermectin or DEC, or a DMSO vehicle control for 1 hour (neutrophils) or 16 hours (PBMC) in vitro. RNA was then extracted and transcriptional profiles of each cell type were analyzed by RNA-Seq.
 
Contributor(s) Wolstenholme AJ
Citation(s) 30279092
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 AI103140 The antifilarial activity of ivermectin and diethylcarbamizine UNIVERSITY OF GEORGIA RESEARCH FOUNDATION, INC Adrian J Wolstenholme
BioProject PRJNA328502
Submission date Feb 05, 2019
Last update date Mar 26, 2019
Contact name Adrian J. Wolstenholme
E-mail(s) adrianw@uga.edu
Phone 706-542-2404
Organization name University of Georgia
Department Infectious Diseases
Street address 501 DW Brooks Dr.
City Athens
State/province GA
ZIP/Postal code 30602
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (33)
GSM3591473 Neutrophil control replicate 1 [DMSO6]
GSM3591474 Neutrophil control replicate 2 [DMSO7]
GSM3591475 Neutrophil control replicate 3 [DMSO8]

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE126091_Neutrophil_RNA_seq_raw_count_matrix.txt.gz 572.3 Kb (ftp)(http) TXT
GSE126091_PBMC_RNA_seq_raw_count_matrix.txt.gz 756.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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