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Series GSE125577 Query DataSets for GSE125577
Status Public on Jan 25, 2019
Title Global Gene Expression Changes in Cholangiocytes Treated with TGF-beta
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The growth factor, TGF-beta can have profound effect on global gene expression changes. Since TGF-beta signaling is not well studied in liver epithelia, RNA-seq analysis was performed to evaluate TGF-beta signaling in cholangiocytes.
 
Overall design Cholangiocyte cell line, HIBEC, were treated with Vehicle or TGF-beta for 48 hours to look at the gene expresson changes induced by TGF-beta
 
Contributor(s) Jalan-Sakrikar N, Huebert RC
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jan 24, 2019
Last update date Jan 26, 2019
Contact name Aditya Bhagwate
E-mail(s) bhagwate.adityavijay@mayo.edu
Organization name Mayo Clinic
Street address 200 1st Street SW
City Rochester
State/province MN
ZIP/Postal code 55905
Country USA
 
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (6)
GSM3577499 HiBEC_Ctrl1
GSM3577500 HiBEC_Ctrl2
GSM3577501 HiBEC_Ctrl3
Relations
BioProject PRJNA516867
SRA SRP181858

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125577_HiBEC_Ctrl_vs_HiBEC_TGFb.diffexp.rpkm.tsv.gz 4.2 Mb (ftp)(http) TSV
GSE125577_HiBEC_Ctrl_vs_HiBEC_TGFb.raw.tsv.gz 1.5 Mb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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