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Series GSE125577 Query DataSets for GSE125577
Status Public on Jan 25, 2019
Title Global Gene Expression Changes in Cholangiocytes Treated with TGF-beta
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The growth factor, TGF-beta can have profound effect on global gene expression changes. Since TGF-beta signaling is not well studied in liver epithelia, RNA-seq analysis was performed to evaluate TGF-beta signaling in cholangiocytes.
Overall design Cholangiocyte cell line, HIBEC, were treated with Vehicle or TGF-beta for 48 hours to look at the gene expresson changes induced by TGF-beta
Contributor(s) Jalan-Sakrikar N, Huebert RC
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Submission date Jan 24, 2019
Last update date Jan 26, 2019
Contact name Aditya Bhagwate
Organization name Mayo Clinic
Street address 200 1st Street SW
City Rochester
State/province MN
ZIP/Postal code 55905
Country USA
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (6)
GSM3577499 HiBEC_Ctrl1
GSM3577500 HiBEC_Ctrl2
GSM3577501 HiBEC_Ctrl3
BioProject PRJNA516867
SRA SRP181858

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125577_HiBEC_Ctrl_vs_HiBEC_TGFb.diffexp.rpkm.tsv.gz 4.2 Mb (ftp)(http) TSV
GSE125577_HiBEC_Ctrl_vs_HiBEC_TGFb.raw.tsv.gz 1.5 Mb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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