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Series GSE125272 Query DataSets for GSE125272
Status Public on Nov 12, 2019
Title Characterization of estrogen and the endocrine-disrupting chemical-induced mouse mammary gland reorganization via single-cell RNA-sequencing
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Exposure to estrogen and its mimics during menopausal transition is thought to modify the structure of mammary gland. Using a surgical menopausal (ovariectomized) mouse model, we assessed how mammary gland tissue was affected by both 17β-estradiol (E2) and polybrominated diphenyl ethers (PBDEs). Three analyzed flame retardants, BDE-47, BDE-100 and BDE-153, are most frequently detected in human serum from all over the world. During physiologically-relevant exposure to E2, PBDEs enhanced E2-mediated regrowth of mammary glands with terminal end bud-like structures. According to sequencing analysis of mammary gland RNA, PBDEs both augmented E2-facilitated cell proliferationgene expression changes and modulated immune regulation. To better elucidate the effects of E2 and PBDEs, single-cell RNA sequencing (scRNAseq) analysis was performed. In a definitive manner, E2 was found to induce Pgr expression in both Esr1+ and Esr1- cells. Significantly, molecular evidence was available to show functional differences among cells with differential expression of Esr1 and Pgr. The PBDEs + E2 treatment increased the number of double positive (Esr1+Pgr+) and Pgr only (Esr1-Pgr+) cells in both mature luminal epithelial and progenitor cells of luminal epithelialcells. Moreover, the combination increased the mammary gland population of M2 macrophages. The results help clarify how exposure to both E2 and endocrine disrupting chemicals like PBDEs during menopausal transition impact mammary gland structure. Ultimately, the findings advance understanding of how exposure can increase the risk of developing breast cancer.
 
Overall design Female BALB/cj mice were exposed to E2 and a mixture of PBDEs for 1 week. Single-cell RNA sequencing was done to evaluate gene expression changes among treatment groups. Mice were subjected to 3 different treatments (Vehicle, E2, E2+PBDE).
 
Contributor(s) Shiuan C, Kanaya N
Citation(s) 31701034
Submission date Jan 17, 2019
Last update date Mar 24, 2023
Contact name Xiwei Wu
E-mail(s) xwu@coh.org
Organization name City of Hope National Medical Center
Department Computational and Quantitative Medicine
Street address 1500 E. Duarte Rd.
City Duarte
State/province CA
ZIP/Postal code 91010
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM3567500 23790_M4_Vehicle
GSM3567501 23789_M4_E2
GSM3567502 23735_M4_E2_Plus_PBDE
This SubSeries is part of SuperSeries:
GSE228190 Characterization of estrogen and the endocrine-disrupting chemical-induced mouse mammary gland reorganization
Relations
BioProject PRJNA515727
SRA SRP180002

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125272_RAW.tar 103.8 Mb (http)(custom) TAR (of MTX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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