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GEO accession:
Series GSE125221
Query DataSets for GSE125221
Status
Public on Sep 01, 2022
Title
Histone chaperone CAF-1 is a synthetic lethal vulnerability in the context of ARID1A deficiencies
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Jan 17, 2019
Last update date
Sep 03, 2022
Contact name
Christoph Bock
E-mail(s)
cbock@cemm.oeaw.ac.at
Organization name
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Street address
Lazarettgasse 14
City
Vienna
ZIP/Postal code
1090
Country
Austria
Platforms (1)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
Samples (116)
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More...
GSM3566444
HAP1_RNA-seq_ARID1A_Control_DMSO_r5
GSM3566445
HAP1_RNA-seq_ARID1A_Control_DMSO_r6
GSM3566446
HAP1_RNA-seq_ARID1A_Control_GSK126_r5
GSM3566447
HAP1_RNA-seq_ARID1A_Control_GSK126_r6
GSM3566450
HAP1_RNA-seq_ARID1A_Control_Testosterone_r5
GSM3566451
HAP1_RNA-seq_ARID1A_Control_Testosterone_r6
GSM3566452
HAP1_RNA-seq_ARID1A_Control_r5
GSM3566453
HAP1_RNA-seq_ARID1A_Control_r6
GSM3566460
HAP1_RNA-seq_ARID1A_dCHAF1A_12h_r5
GSM3566461
HAP1_RNA-seq_ARID1A_dCHAF1A_12h_r6
GSM3566462
HAP1_RNA-seq_ARID1A_dCHAF1A_24h_r5
GSM3566463
HAP1_RNA-seq_ARID1A_dCHAF1A_24h_r6
GSM3566464
HAP1_RNA-seq_ARID1A_shCHAF1A_DMSO_r5
GSM3566465
HAP1_RNA-seq_ARID1A_shCHAF1A_DMSO_r6
GSM3566466
HAP1_RNA-seq_ARID1A_shCHAF1A_GSK126_r5
GSM3566467
HAP1_RNA-seq_ARID1A_shCHAF1A_GSK126_r6
GSM3566468
HAP1_RNA-seq_ARID1A_shCHAF1A_Testosterone_r5
GSM3566469
HAP1_RNA-seq_ARID1A_shCHAF1A_Testosterone_r6
GSM3566484
HAP1_RNA-seq_WT_Control_DMSO_r5
GSM3566485
HAP1_RNA-seq_WT_Control_DMSO_r6
GSM3566486
HAP1_RNA-seq_WT_Control_GSK126_r5
GSM3566487
HAP1_RNA-seq_WT_Control_GSK126_r6
GSM3566490
HAP1_RNA-seq_WT_Control_Testosterone_r5
GSM3566491
HAP1_RNA-seq_WT_Control_Testosterone_r6
GSM3566492
HAP1_RNA-seq_WT_Control_r5
GSM3566493
HAP1_RNA-seq_WT_Control_r6
GSM3566500
HAP1_RNA-seq_WT_dCHAF1A_12h_r5
GSM3566501
HAP1_RNA-seq_WT_dCHAF1A_12h_r6
GSM3566502
HAP1_RNA-seq_WT_dCHAF1A_24h_r5
GSM3566503
HAP1_RNA-seq_WT_dCHAF1A_24h_r6
GSM3566504
HAP1_RNA-seq_WT_shCHAF1A_DMSO_r5
GSM3566505
HAP1_RNA-seq_WT_shCHAF1A_DMSO_r6
GSM3566506
HAP1_RNA-seq_WT_shCHAF1A_GSK126_r5
GSM3566507
HAP1_RNA-seq_WT_shCHAF1A_GSK126_r6
GSM3566508
HAP1_RNA-seq_WT_shCHAF1A_Testosterone_r5
GSM3566509
HAP1_RNA-seq_WT_shCHAF1A_Testosterone_r6
GSM3566510
HAP1_ATAC-seq_ARID1A_CHAF1A_Hairpin1_R1
GSM3566511
HAP1_ATAC-seq_ARID1A_CHAF1A_Hairpin1_R2
GSM3566512
HAP1_ATAC-seq_ARID1A_CHAF1A_Hairpin2_R1
GSM3566513
HAP1_ATAC-seq_ARID1A_CHAF1A_Hairpin2_R2
GSM3566514
HAP1_ATAC-seq_ARID1A_CHAF1A_Hairpin3_R1
GSM3566515
HAP1_ATAC-seq_ARID1A_CHAF1A_Hairpin3_R2
GSM3566516
HAP1_ATAC-seq_ARID1A_CHAF1B_Hairpin1_R1
GSM3566517
HAP1_ATAC-seq_ARID1A_CHAF1B_Hairpin1_R2
GSM3566518
HAP1_ATAC-seq_ARID1A_CHAF1B_Hairpin2_R1
GSM3566519
HAP1_ATAC-seq_ARID1A_CHAF1B_Hairpin2_R2
GSM3566520
HAP1_ATAC-seq_ARID1A_CHAF1B_Hairpin3_R1
GSM3566521
HAP1_ATAC-seq_ARID1A_CHAF1B_Hairpin3_R2
GSM3566522
HAP1_ATAC-seq_ARID1A_CHAF1B_Hairpin4_R1
GSM3566523
HAP1_ATAC-seq_ARID1A_CHAF1B_Hairpin4_R2
GSM3566524
HAP1_ATAC-seq_ARID1A_Control_R1
GSM3566525
HAP1_ATAC-seq_ARID1A_Control_R2
GSM3566526
HAP1_ATAC-seq_ARID1A_HIRA_Hairpin1_R1
GSM3566527
HAP1_ATAC-seq_ARID1A_HIRA_Hairpin1_R2
GSM3566528
HAP1_ATAC-seq_ARID1A_HIRA_Hairpin2_R1
GSM3566529
HAP1_ATAC-seq_ARID1A_HIRA_Hairpin2_R2
GSM3566530
HAP1_ATAC-seq_ARID1A_HIRA_Hairpin3_R1
GSM3566531
HAP1_ATAC-seq_ARID1A_HIRA_Hairpin3_R2
GSM3566532
HAP1_ATAC-seq_ARID1A_dCHAF1A-12h_r5
GSM3566533
HAP1_ATAC-seq_ARID1A_dCHAF1A-12h_r6
GSM3566534
HAP1_ATAC-seq_ARID1A_dCHAF1A-24h_r5
GSM3566535
HAP1_ATAC-seq_ARID1A_dCHAF1A-24h_r6
GSM3566536
HAP1_ATAC-seq_ARID1A_dCHAF1A-Control_r5
GSM3566537
HAP1_ATAC-seq_ARID1A_dCHAF1A-Control_r6
GSM3566538
HAP1_ATAC-seq_ARID1A_shCHAF1A_DMSO_r5
GSM3566539
HAP1_ATAC-seq_ARID1A_shCHAF1A_DMSO_r6
GSM3566540
HAP1_ATAC-seq_ARID1A_shCHAF1A_GSK126_r5
GSM3566541
HAP1_ATAC-seq_ARID1A_shCHAF1A_GSK126_r6
GSM3566542
HAP1_ATAC-seq_ARID1A_shCHAF1A_Testosterone_r5
GSM3566543
HAP1_ATAC-seq_ARID1A_shCHAF1A_Testosterone_r6
GSM3566544
HAP1_ATAC-seq_ARID1A_shControl_DMSO_r5
GSM3566545
HAP1_ATAC-seq_ARID1A_shControl_DMSO_r6
GSM3566546
HAP1_ATAC-seq_ARID1A_shControl_GSK126_r5
GSM3566547
HAP1_ATAC-seq_ARID1A_shControl_GSK126_r6
GSM3566548
HAP1_ATAC-seq_ARID1A_shControl_Testosterone_r5
GSM3566549
HAP1_ATAC-seq_ARID1A_shControl_Testosterone_r6
GSM3566550
HAP1_ATAC-seq_WT_CHAF1A_Hairpin1_R1
GSM3566551
HAP1_ATAC-seq_WT_CHAF1A_Hairpin1_R2
GSM3566552
HAP1_ATAC-seq_WT_CHAF1A_Hairpin2_R1
GSM3566553
HAP1_ATAC-seq_WT_CHAF1A_Hairpin2_R2
GSM3566554
HAP1_ATAC-seq_WT_CHAF1A_Hairpin3_R1
GSM3566555
HAP1_ATAC-seq_WT_CHAF1A_Hairpin3_R2
GSM3566556
HAP1_ATAC-seq_WT_CHAF1B_Hairpin1_R1
GSM3566557
HAP1_ATAC-seq_WT_CHAF1B_Hairpin1_R2
GSM3566558
HAP1_ATAC-seq_WT_CHAF1B_Hairpin2_R1
GSM3566559
HAP1_ATAC-seq_WT_CHAF1B_Hairpin2_R2
GSM3566560
HAP1_ATAC-seq_WT_CHAF1B_Hairpin3_R1
GSM3566561
HAP1_ATAC-seq_WT_CHAF1B_Hairpin3_R2
GSM3566562
HAP1_ATAC-seq_WT_CHAF1B_Hairpin4_R1
GSM3566563
HAP1_ATAC-seq_WT_CHAF1B_Hairpin4_R2
GSM3566564
HAP1_ATAC-seq_WT_Control_R1
GSM3566565
HAP1_ATAC-seq_WT_Control_R2
GSM3566566
HAP1_ATAC-seq_WT_HIRA_Hairpin1_R1
GSM3566567
HAP1_ATAC-seq_WT_HIRA_Hairpin1_R2
GSM3566568
HAP1_ATAC-seq_WT_HIRA_Hairpin2_R1
GSM3566569
HAP1_ATAC-seq_WT_HIRA_Hairpin2_R2
GSM3566570
HAP1_ATAC-seq_WT_HIRA_Hairpin3_R1
GSM3566571
HAP1_ATAC-seq_WT_HIRA_Hairpin3_R2
GSM3566572
HAP1_ATAC-seq_WT_dCHAF1A-12h_r5
GSM3566573
HAP1_ATAC-seq_WT_dCHAF1A-12h_r6
GSM3566574
HAP1_ATAC-seq_WT_dCHAF1A-24h_r5
GSM3566575
HAP1_ATAC-seq_WT_dCHAF1A-24h_r6
GSM3566576
HAP1_ATAC-seq_WT_dCHAF1A-Control_r5
GSM3566577
HAP1_ATAC-seq_WT_dCHAF1A-Control_r6
GSM3566578
HAP1_ATAC-seq_WT_shCHAF1A_DMSO_r5
GSM3566579
HAP1_ATAC-seq_WT_shCHAF1A_DMSO_r6
GSM3566580
HAP1_ATAC-seq_WT_shCHAF1A_GSK126_r5
GSM3566581
HAP1_ATAC-seq_WT_shCHAF1A_GSK126_r6
GSM3566582
HAP1_ATAC-seq_WT_shCHAF1A_Testosterone_r5
GSM3566583
HAP1_ATAC-seq_WT_shCHAF1A_Testosterone_r6
GSM3566584
HAP1_ATAC-seq_WT_shControl_DMSO_r5
GSM3566585
HAP1_ATAC-seq_WT_shControl_DMSO_r6
GSM3566586
HAP1_ATAC-seq_WT_shControl_GSK126_r5
GSM3566587
HAP1_ATAC-seq_WT_shControl_GSK126_r6
GSM3566588
HAP1_ATAC-seq_WT_shControl_Testosterone_r5
GSM3566589
HAP1_ATAC-seq_WT_shControl_Testosterone_r6
This SuperSeries is composed of the following SubSeries:
GSE125219
Histone chaperone CAF-1 is a synthetic lethal vulnerability in the context of ARID1A deficiencies [RNA-Seq]
GSE125220
Histone chaperone CAF-1 is a synthetic lethal vulnerability in the context of ARID1A deficiencies [ATAC-Seq]
Relations
BioProject
PRJNA515684
Download family
Format
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GSE125221_RAW.tar
30.7 Gb
(http)
(custom)
TAR (of BIGWIG, NARROWPEAK)
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