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| Status |
Public on Sep 13, 2020 |
| Title |
Regulation of neuronal commitment in mouse embryonic stem cells by the Reno/Bahcc1 locus |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Regulation of neuronal commitment in mouse embryonic stem cells by the Reno/Bahcc1 locus
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| Overall design |
RNA-seq and ATAC-seq of ES cells, NPCs, and neurons
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| Contributor(s) |
Ulitsky I, Hezroni H |
| Citation(s) |
32969152 |
| |
| Submission date |
Dec 31, 2018 |
| Last update date |
Dec 13, 2020 |
| Contact name |
Igor Ulitsky |
| E-mail(s) |
igor.ulitsky@weizmann.ac.il
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| Organization name |
Weizmann Institute of Science
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| Street address |
Hertzl St.
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| City |
Rehovot |
| ZIP/Postal code |
76100 |
| Country |
Israel |
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| Platforms (2) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (77)
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| GSM3535735 |
NT shRNA, neurons, day 8, rep1 |
| GSM3535736 |
NT shRNA, neurons, day 8, rep2 |
| GSM3535737 |
NT shRNA, neurons, day 8, rep3 |
| GSM3535738 |
Reno shRNA1, neurons, day 8, rep1 |
| GSM3535739 |
Reno shRNA1, neurons, day 8, rep2 |
| GSM3535740 |
Reno shRNA2, neurons, day 8, rep1 |
| GSM3535741 |
Reno shRNA2, neurons, day 8, rep2 |
| GSM3535742 |
lnc-Nr2f1 shRNA1, neurons, day 8, rep1 |
| GSM3535743 |
lnc-Nr2f1 shRNA1, neurons, day 8, rep2 |
| GSM3535744 |
lnc-Nr2f1 shRNA2, neurons, day 8, rep1 |
| GSM3535745 |
lnc-Nr2f1 shRNA2, neurons, day 8, rep2 |
| GSM3535746 |
Cox10as1 shRNA1, neurons, day 8, rep1 |
| GSM3535747 |
Cox10as1 shRNA1, neurons, day 8, rep2 |
| GSM3535748 |
Cox10as1 shRNA2, neurons, day 8, rep1 |
| GSM3535749 |
Cox10as1 shRNA2, neurons, day 8, rep2 |
| GSM3535750 |
WT1, NPCs, day 4, rep1 |
| GSM3535751 |
WT1, NPCs, day 4, rep2 |
| GSM3535752 |
WT2, NPCs, day 4, rep1 |
| GSM3535753 |
WT2, NPCs, day 4, rep2 |
| GSM3535754 |
Renom/m1, NPCs, day 4, rep1 |
| GSM3535755 |
Renom/m1, NPCs, day 4, rep2 |
| GSM3535756 |
Renom/m2, NPCs, day 4, rep1 |
| GSM3535757 |
Renom/m2, NPCs, day 4, rep2 |
| GSM3535758 |
Bahcc1m/m1, NPCs, day 4, rep1 |
| GSM3535759 |
Bahcc1m/m1, NPCs, day 4, rep2 |
| GSM3535760 |
Bahcc1m/m2, NPCs, day 4, rep1 |
| GSM3535761 |
Bahcc1m/m2, NPCs, day 4, rep2 |
| GSM3535762 |
WT1, NPCs, day 2, rep1 |
| GSM3535763 |
WT1, NPCs, day 2, rep2 |
| GSM3535764 |
WT2, NPCs, day 2, rep1 |
| GSM3535765 |
WT2, NPCs, day 2, rep2 |
| GSM3535766 |
Renom/m1, NPCs, day 2, rep1 |
| GSM3535767 |
Renom/m1, NPCs, day 2, rep2 |
| GSM3535768 |
Renom/m2, NPCs, day 2, rep1 |
| GSM3535769 |
Renom/m2, NPCs, day 2, rep2 |
| GSM3535770 |
Bahcc1m/m1, NPCs, day 2, rep1 |
| GSM3535771 |
Bahcc1m/m1, NPCs, day 2, rep2 |
| GSM3535772 |
Bahcc1m/m2, NPCs, day 2, rep1 |
| GSM3535773 |
Bahcc1m/m2, NPCs, day 2, rep2 |
| GSM4746140 |
NT shRNA, NPCs, day 2, rep1 |
| GSM4746141 |
NT shRNA, NPCs, day 2, rep2 |
| GSM4746142 |
Reno shRNAs, NPCs, day 2, rep1 |
| GSM4746143 |
Reno shRNAs, NPCs, day 2, rep2 |
| GSM4746144 |
Bahcc1 shRNAs, NPCs, day 2, rep1 |
| GSM4746145 |
Bahcc1 shRNAs, NPCs, day 2, rep2 |
| GSM4746146 |
Reno Gapmer1, NPCs, day 2, rep1 |
| GSM4746147 |
Reno Gapmer2, NPCs, day 2, rep1 |
| GSM4746148 |
Scrambled Gapmer, NPCs, day 2, rep2 |
| GSM4746149 |
Reno Gapmer1, NPCs, day 2, rep2 |
| GSM4746150 |
Reno Gapmer2, NPCs, day 2, rep2 |
| GSM4746151 |
Scrambled Gapmer, NPCs, day 2, rep3 |
| GSM4746152 |
Reno Gapmer1, NPCs, day 2, rep3 |
| GSM4746153 |
WT1, NPCs, day2, rep1 |
| GSM4746154 |
WT2, NPCs, day2, rep1 |
| GSM4746155 |
Renom/m1, NPCs, day2, rep1 |
| GSM4746156 |
Renom/m2, NPCs, day2, rep1 |
| GSM4746157 |
WT2, NPCs, day2, rep2 |
| GSM4746158 |
Renom/m1, NPCs, day2, rep2 |
| GSM4746159 |
Renom/m2, NPCs, day2, rep2 |
| GSM4746160 |
WT1, NPCs, day2, rep3 |
| GSM4746161 |
WT2, NPCs, day2, rep3 |
| GSM4746162 |
Renom/m1, NPCs, day2, rep3 |
| GSM4746163 |
Renom/m2, NPCs, day2, rep3 |
| GSM4746164 |
WT2 plus Dox, NPCs, day2, rep1 |
| GSM4746165 |
WT2 minus Dox, NPCs, day2, rep1 |
| GSM4746166 |
Renonm/m2 plus Dox, NPCs, day2, rep1 |
| GSM4746167 |
Renonm/m2 minus Dox, NPCs, day2, rep1 |
| GSM4746168 |
WT2 plus Dox, NPCs, day2, rep2 |
| GSM4746169 |
WT2 minus Dox, NPCs, day2, rep2 |
| GSM4746170 |
Renonm/m2 plus Dox, NPCs, day2, rep2 |
| GSM4746171 |
Renonm/m2 minus Dox, NPCs, day2, rep2 |
| GSM4746172 |
WT2 plus Dox, NPCs, day2, rep3 |
| GSM4746173 |
WT2 minus Dox, NPCs, day2, rep3 |
| GSM4746174 |
Renonm/m2 plus Dox, NPCs, day2, rep3 |
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| Relations |
| BioProject |
PRJNA512278 |
| SRA |
SRP174934 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE124517_RAW.tar |
6.9 Gb |
(http)(custom) |
TAR (of BW, NARROWPEAK, TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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