NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE123836 Query DataSets for GSE123836
Status Public on Sep 18, 2020
Title Myf6/MRF4 Mediated Myokine Signaling is Required for the Maintenance of the Adult Skeletal Muscle Stem Cell Pool
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary In metazoans, skeletal muscle evolved to contract and to produce force. Recent experimental evidence suggests, however, that skeletal muscle has also acquired endocrine functions and produces a vast array of myokines, but how myokine production is regulated and how they affect the resident stem cell population of the skeletal muscle is unknown. Here, we show that in adult skeletal muscle, Myf6/MRF4 is a major regulator of myokine expression. Genetic deletion of Myf6 in skeletal muscles leads to exhaustion of the muscle stem cell (MuSCs) pool in adult mice in a myokine-dependent manner but, surprisingly, does not disrupt muscle differentiation. Using ChIP-Seq and gene expression analyses of myogenic factors, we show that Myf6/MRF4 is essential for the transcriptional activation of many myokines and muscle-secreted proteins, including ligands for canonical signaling pathways such as EGFR, VEGFR and STAT3. Consequently, MuSCs from Myf6 knockout animals show impaired activation of those signaling pathways and exhibit impaired quiescence, defective self-renewal, but nevertheless undergo differentiation. Lastly, we show that induction of myokine expression during aerobic and anaerobic exercise closely correlates with Myf6 expression. Together, these findings indicate that control of myokine signaling by Myf6 is critical to maintain muscle stem cell pool in adult skeletal muscle.
 
Overall design ChIP-seq for Myf6 in adult mouse muscle satellite cells, and RNA-seq in WT and Myf6 KO conditions, with or without injury.
 
Contributor(s) Perkins TJ, Soleimani VD
Citation(s) 33047485
Submission date Dec 14, 2018
Last update date Dec 22, 2020
Contact name Theodore Perkins
E-mail(s) theodore.j.perkins@gmail.com
Phone 6137378899
Organization name Ottawa Hospital Research Institute
Department Regenerative Medicine Program
Street address 501 Smyth Rd.
City Ottawa
State/province Ontario
ZIP/Postal code K1H8L6
Country Canada
 
Platforms (2)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (14)
GSM3512225 Myf6_ChIPSeq
GSM3512226 ChIPSeq_Control
GSM3512227 WT_RNASeq_Rep1
Relations
BioProject PRJNA510349
SRA SRP173606

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE123836_Injury_WT_vs_Myf6KO_DiffExpr.tsv.gz 1.1 Mb (ftp)(http) TSV
GSE123836_Myf6_5d_peaks.txt.gz 329.4 Kb (ftp)(http) TXT
GSE123836_WT_vs_Myf6KO_DiffExpr.tsv.gz 1.0 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap