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Series GSE123513 Query DataSets for GSE123513
Status Public on Apr 17, 2019
Title Oct1/Pou2f1 is selectively required for gut regeneration and regulates gut malignancy
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary As part of a larger study focused on deletion of Oct1 (Pou2f1) in the mouse gut, we identify Oct1 target genes in HCT116 colon carcinomal cells, with H3K4me3 and input controls. Identified target genes are associated with mitotic stability, metabolism, stress response and malignancy.
Overall design Oct1- or H3K4me3-enriched DNA fragments, and input controls, were sequenced in triplicate
Contributor(s) Vázquez-Arreguín K, Tantin D
Citation(s) 31059499
Submission date Dec 07, 2018
Last update date May 07, 2019
Contact name Dean Tantin
Phone (801) 587-3035
Organization name University of Utah
Department Department of Pathology
Street address 15 North Medical Drive East
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (9)
GSM3505818 Oct1 replicate 1
GSM3505819 Oct1 replicate 2
GSM3505820 Oct1 replicate 3
BioProject PRJNA509072
SRA SRP173207

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource 1.4 Gb (ftp)(http) BW
GSE123513_H3K4Me3vsInputPeaks.xlsx 11.1 Mb (ftp)(http) XLSX 1.6 Gb (ftp)(http) BW 2.0 Gb (ftp)(http) BW
GSE123513_Oct1vsInputPeaks.xlsx 1.4 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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