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| Status |
Public on Jun 23, 2020 |
| Title |
Suppression of adenosine-to-inosine (A-to-I) RNA editome by death associated protein 3 (DAP3) promotes cancer progression |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA editing introduces nucleotide changes in RNA sequences. Recent studies have reported that aberrant A-to-I RNA editing profiles are implicated in cancers. Albeit changes in expression and activity of ADAR genes are thought to have been responsible for the dysregulated RNA editome in diseases, they are not always correlated, indicating the involvement of secondary regulators. Here, we uncover DAP3 as a potent repressor of editing and a strong oncogene in cancer. DAP3 mainly interacts with the deaminase domain of ADAR2 and represses editing via disrupting association of ADAR2 with its target transcripts. PDZD7, an exemplary DAP3-repressed editing target, undergoes a protein recoding editing at stop codon [Stop →Trp (W)]. Because of editing suppression by DAP3, the unedited PDZD7WT, which is more tumorigenic than edited PDZD7Stop518W, is accumulated in tumors. In sum, cancer cells may acquire malignant properties for their survival advantage through suppressing RNA editome by DAP3.
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| Overall design |
We constructed strand-specific cDNA libraries of 6 total RNA samples and sequenced the libraries using Illumina Hiseq 4000 platform achieving over 200 millions of mappable reads per sample. Then we examined Adenosine-to-inosine (A-to-I) editing sites in EC109 and KYSE180 cells after depletion of genes of our interest.
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| |
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| Contributor(s) |
Leilei C, Jian H, An O |
| Citation(s) |
32596459 |
| |
| Submission date |
Nov 27, 2018 |
| Last update date |
Apr 14, 2021 |
| Contact name |
Polly Leilei Chen |
| E-mail(s) |
polly_chen@nus.edu.sg
|
| Phone |
+6565168435
|
| Organization name |
Cancer Science Institute of Singapore NUS
|
| Department |
Department of Anatomy
|
| Lab |
PLC Lab
|
| Street address |
#12-01, MD6, 14 Medical Drive
|
| City |
Singapore |
| ZIP/Postal code |
117599 |
| Country |
Singapore |
| |
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| Platforms (1) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA507260 |
| SRA |
SRP170961 |
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