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Series GSE123009 Query DataSets for GSE123009
Status Public on Jun 24, 2019
Title Alterations in hepatic gene expression and DNA methylation as underlying mechanisms of disturbed metabolism in adult mouse offspring after exposure to a prenatal high fat diet
Organism Mus musculus
Experiment type Expression profiling by array
Summary Exposure to a prenatal high fat (HF) diet leads to an impaired metabolic phenotype in mouse offspring. The underlying mechanisms, however, are not yet fully understood. Therefore, this study investigated whether the impaired metabolic phenotype could have been mediated through altered hepatic DNA methylation and gene expression.
In this study, both parent mice received a HF or low fat (LF) diet before and during pregnancy, and throughout lactation, after which offspring was weaned onto a HF diet. Previous work showed that at 12 weeks of age, the offspring displayed postprandial hypertriglyceridemia, which related to an impaired clearance of lipids from the blood into the liver after a HF meal. To study the mechanisms underlying the impaired metabolic phenotype after prenatal exposure to a HF diet, hepatic genome-wide gene expression was studied using whole transcript microarrays. In addition, hepatic DNA methylation of selected genes was assessed by bisulphite pyrosequencing.
 
Overall design Male offspring mice were sacrificed at 12 and 28 weeks of age. Livers were obtained and total RNA was isolated for microarray hybridization. In total, 32 samples were included: for week 12, n=7 per group (prenatal HF or LF) and for week 28, n=9 per group.
 
Contributor(s) Rouschop SH, Schrauwen-Hinderling VB, Opperhuizen A, Godschalk RW, van Schooten FJ
Citation(s) 31064776
Submission date Nov 27, 2018
Last update date Jun 26, 2019
Contact name Sven Rouschop
Organization name Maastricht University
Department Pharmacology and Toxicology
Street address Universiteitssingel 50
City Maastricht
ZIP/Postal code 6229 ER
Country Netherlands
 
Platforms (1)
GPL20837 [MoGene-1_1-st] Affymetrix Mouse Gene 1.1 ST Array [transcript (gene) version] [CDF: mogene11st_Mm_ENTREZG_19.0.0]
Samples (32)
GSM3490584 Liver_prenatal_LF_wk12_rep1
GSM3490585 Liver_prenatal_HF_wk12_rep1
GSM3490586 Liver_prenatal_HF_wk12_rep2
Relations
BioProject PRJNA507244

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE123009_Matrix_table_prenatal_HF_GEO_submission.xlsx 13.5 Mb (ftp)(http) XLSX
GSE123009_RAW.tar 151.9 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
Processed data are available on Series record

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