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Series GSE122612 Query DataSets for GSE122612
Status Public on Jul 12, 2019
Title Predicting drug-free remission in rheumatoid arthritis: the Biomarkers of Remission in Rheumatoid Arthritis (BioRRA) Study
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Sustained remission is now an achievable goal in rheumatoid arthritis (RA) using modern treat-to-target regimens of disease-modifying anti-rheumatic drugs (DMARDs). Recent studies have demonstrated that up to half of patients in remission can discontinue DMARDs and maintain drug-free remission (DFR), with consequent benefits of avoidance of drug toxicity and the need for regular and expensive safety monitoring. However, there are currently no reliable biomarkers that can predict DFR prior to withdrawal of DMARDs.
Aim: As part of a wider study of DMARD withdrawal (the BioRRA study), we aimed to identify predictors of time-to-flare following DMARD cessation using whole-genome bulk RNA sequencing data from circulating CD4+ T cells.
 
Overall design Circulating CD4+ T cells were isolated from whole blood at baseline in 44 patients with RA in remission immediately prior to conventional synthetic DMARD cessation. Following total RNA extraction and poly-A selection, mRNA was sequenced using an Illumina NextSeq 500.
 
Contributor(s) Baker KF, Isaacs JD
Citation(s) 31280933
Submission date Nov 16, 2018
Last update date Jul 14, 2019
Contact name Kenneth Frank Baker
E-mail(s) kenneth.baker@ncl.ac.uk
Organization name Newcastle University
Department Translational and Clinical Research Institute
Street address Framlington Place
City Newcastle upon Tyne
ZIP/Postal code NE2 4HH
Country United Kingdom
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (44)
GSM3475795 A1
GSM3475796 A4
GSM3475797 A7
Relations
BioProject PRJNA505773
SRA SRP169062

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE122612_RAW.tar 94.9 Mb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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