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| Status |
Public on Nov 14, 2018 |
| Title |
RNA seq analysis of Active TB and treatment after 6 &12 months |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Study to identify putative condition specific biomarkers
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| Overall design |
Whole Blood RNA seq analysis of patient samples
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| Contributor(s) |
Vyakarnam A, Basu S, Swaminathan S, Mohan A, Sambarey A, Devaprasad A, Ahmed A, Rath S, Chandra N |
| Citation(s) |
28065665, 35118358 |
| |
| Submission date |
Nov 13, 2018 |
| Last update date |
Feb 08, 2022 |
| Contact name |
Nagasuma Chandra |
| E-mail(s) |
nchandra@iisc.ac.in
|
| Phone |
91-80-2293-2892
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| Organization name |
IISC
|
| Department |
Biochemistry
|
| Street address |
C V Raman Road
|
| City |
Bangalore |
| State/province |
Karnataka |
| ZIP/Postal code |
560012 |
| Country |
India |
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| Platforms (1) |
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| Samples (14)
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| GSM3467212 |
SO-4014-LTBM021BL_S7(Active TB Replicate1) |
| GSM3467213 |
SO-4014-LTBM021FU1_S8(6_Month_Treatment Replicate1) |
| GSM3467214 |
SO-4014-LTBM021FU2_S9(12_Month_Treatment Replicate1) |
| GSM3467215 |
SO-4014-Repl4-LTBM036BL_S10(Active TB Replicate2) |
| GSM3467216 |
SO-4014-Repl4-LTBM036FU1_S11(6_Month_Treatment Replicate2) |
| GSM3467217 |
SO-4014-Repl4-LTBM036FU2_S12(12_Month_Treatment Replicate1) |
| GSM3467218 |
SO-4014-Repl4-LTBM016BL_S13(Active TB Replicate3) |
| GSM3467219 |
SO-4014-Repl4-LTBM016FU1_S14(6_Month_Treatment Replicate3) |
| GSM3467220 |
SO-4014-Repl4-LTBM016FU2_S15(12_Month_Treatment Replicate1) |
| GSM3467221 |
SO-4014-Repl4-LTBM015BL_S16(Active TB Replicate4) |
| GSM3467222 |
SO-4014-Repl4-LTBM015FU2_S17(12_Month_Treatment Replicate1) |
| GSM3467223 |
SO-4014-120731114_S1(Healthy Control Replicate1) |
| GSM3467224 |
SO-4014-Repl4-LTB-ve12073100_S2(Healthy Control Replicate2) |
| GSM3467225 |
SO-4014-Repl4-LTB-ve120731166_S3(Healthy Control Replicate3) |
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| Relations |
| BioProject |
PRJNA505338 |
| SRA |
SRP168555 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE122485_RAW.tar |
23.1 Mb |
(http)(custom) |
TAR (of FPKM_TRACKING) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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